Analysis of interatomic Contacts of Structural Units in PDB entry:
7PAT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PAT entry

There are 31 chains in PDB entry 7PAT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	MET 1	GLU 47
1	MET 1	ILE 59
2	MET 1	GLY 37
a	PRO 2	GLN 286
b	MET 1	ALA 229
c	ALA 2	PHE 211
d	ASN 3	LEU 177
e	LYS 3	LYS 178
f	MET 1	ASP 145
g	ALA 3	LYS 128
h	ILE 9	ILE 136
i	LYS 3	SER 146
j	MET 1	VAL 122
k	LEU 3	GLU 150
l	MET 1	GLU 136
m	SER 2	ASP 120
n	MET 1	PHE 116
o	LYS 3	ARG 117
p	MET 1	SER 114
q	MET 1	HIS 99
r	MET 1	ARG 139
s	ASP 2	VAL 93
t	MET 1	LEU 111
u	SER 17	LEU 102
v	ALA 2	LEU 64
w	THR 2	SER 109
x	PHE 5	GLY 48
y	ALA 2	TYR 57
z	ALA 2	LYS 51
3	A 8	U 2900
4	U 1	C 108

There are 87 helices in PDB entry 7PAT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	8	17	Right-handed alpha
Helix 2	AA2	0	17	22	Right-handed alpha
Helix 3	AA3	0	24	37	Right-handed alpha
Helix 4	AA4	1	4	9	Right-handed alpha
Helix 5	AA5	1	34	41	Right-handed alpha
Helix 6	AA6	1	48	59	Right-handed alpha
Helix 7	AA7	a	137	141	Right-handed 310
Helix 8	AA8	a	205	210	Right-handed 310
Helix 9	AA9	a	215	223	Right-handed alpha
Helix 10	AB1	a	272	276	Right-handed 310
Helix 11	AB2	b	63	73	Right-handed alpha
Helix 12	AB3	b	97	101	Right-handed 310
Helix 13	AB4	b	121	126	Right-handed alpha
Helix 14	AB5	c	21	25	Right-handed 310
Helix 15	AB6	c	30	43	Right-handed alpha
Helix 16	AB7	c	104	122	Right-handed alpha
Helix 17	AB8	c	129	134	Right-handed alpha
Helix 18	AB9	c	139	151	Right-handed alpha
Helix 19	AC1	c	165	171	Right-handed alpha
Helix 20	AC2	c	187	195	Right-handed alpha
Helix 21	AC3	c	202	211	Right-handed alpha
Helix 22	AC4	d	4	11	Right-handed alpha
Helix 23	AC5	d	11	20	Right-handed alpha
Helix 24	AC6	d	50	61	Right-handed alpha
Helix 25	AC7	d	93	111	Right-handed alpha
Helix 26	AC8	d	163	173	Right-handed alpha
Helix 27	AC9	e	61	84	Right-handed alpha
Helix 28	AD1	e	140	153	Right-handed alpha
Helix 29	AD2	f	46	73	Right-handed alpha
Helix 30	AD3	f	94	105	Right-handed alpha
Helix 31	AD4	f	109	113	Right-handed 310
Helix 32	AD5	g	4	21	Right-handed alpha
Helix 33	AD6	g	33	45	Right-handed alpha
Helix 34	AD7	g	55	66	Right-handed alpha
Helix 35	AD8	g	88	103	Right-handed alpha
Helix 36	AD9	g	119	127	Right-handed alpha
Helix 37	AE1	h	23	28	Right-handed alpha
Helix 38	AE2	h	31	43	Right-handed alpha
Helix 39	AE3	h	75	80	Right-handed alpha
Helix 40	AE4	h	97	108	Right-handed alpha
Helix 41	AE5	h	116	129	Right-handed alpha
Helix 42	AE6	h	130	132	Right-handed 310
Helix 43	AE7	i	27	40	Right-handed alpha
Helix 44	AE8	i	61	65	Right-handed 310
Helix 45	AE9	i	70	75	Right-handed alpha
Helix 46	AF1	i	92	97	Right-handed alpha
Helix 47	AF2	i	100	111	Right-handed alpha
Helix 48	AF3	i	117	123	Right-handed alpha
Helix 49	AF4	i	133	139	Right-handed 310
Helix 50	AF5	j	111	116	Right-handed alpha
Helix 51	AF6	k	58	62	Right-handed 310
Helix 52	AF7	k	82	86	Right-handed alpha
Helix 53	AF8	k	94	99	Right-handed alpha
Helix 54	AF9	k	132	142	Right-handed alpha
Helix 55	AG1	l	44	59	Right-handed alpha
Helix 56	AG2	l	110	125	Right-handed alpha
Helix 57	AG3	m	10	28	Right-handed alpha
Helix 58	AG4	m	35	53	Right-handed alpha
Helix 59	AG5	m	56	64	Right-handed alpha
Helix 60	AG6	m	74	86	Right-handed alpha
Helix 61	AG7	m	87	93	Right-handed 310
Helix 62	AG8	n	5	23	Right-handed alpha
Helix 63	AG9	n	72	85	Right-handed alpha
Helix 64	AH1	n	100	111	Right-handed alpha
Helix 65	AH2	o	8	15	Right-handed alpha
Helix 66	AH3	o	16	18	Right-handed 310
Helix 67	AH4	o	58	61	Right-handed 310
Helix 68	AH5	o	102	107	Right-handed alpha
Helix 69	AH6	p	5	20	Right-handed alpha
Helix 70	AH7	p	30	72	Right-handed alpha
Helix 71	AH8	p	74	85	Right-handed alpha
Helix 72	AH9	p	91	101	Right-handed alpha
Helix 73	AI1	p	104	112	Right-handed alpha
Helix 74	AI2	r	13	24	Right-handed alpha
Helix 75	AI3	r	29	37	Right-handed alpha
Helix 76	AI4	r	41	61	Right-handed alpha
Helix 77	AI5	r	88	92	Right-handed 310
Helix 78	AI6	r	115	136	Right-handed alpha
Helix 79	AI7	s	13	20	Right-handed alpha
Helix 80	AI8	s	36	48	Right-handed alpha
Helix 81	AI9	v	52	61	Right-handed alpha
Helix 82	AJ1	w	3	7	Right-handed alpha
Helix 83	AJ2	w	13	35	Right-handed alpha
Helix 84	AJ3	w	42	59	Right-handed alpha
Helix 85	AJ4	w	82	109	Right-handed alpha
Helix 86	AJ5	y	9	18	Right-handed alpha
Helix 87	AJ6	y	19	21	Right-handed 310

There are 54 sheets in PDB entry 7PAT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	11	14	first strand
Strand 2	1	17	21	anti-parallel
Strand 3	1	45	46	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	2	3	first strand
Strand 2	2	34	35	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	15	19	first strand
Strand 2	2	22	26	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	3	4	first strand
Strand 2	a	19	20	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	38	41	first strand
Strand 2	a	64	67	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	106	110	first strand
Strand 2	a	96	101	anti-parallel
Strand 3	a	81	87	anti-parallel
Strand 4	a	120	121	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	147	148	first strand
Strand 2	a	199	200	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	168	170	first strand
Strand 2	a	180	184	anti-parallel
Strand 3	a	188	192	anti-parallel
Strand 4	a	278	281	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	5	18	first strand
Strand 2	b	22	31	anti-parallel
Strand 3	b	190	193	anti-parallel
Strand 4	b	173	185	anti-parallel
Strand 5	b	107	113	anti-parallel
Strand 6	b	204	209	anti-parallel
Strand 7	b	5	18	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	35	40	first strand
Strand 2	b	49	56	anti-parallel
Strand 3	b	78	85	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	118	120	first strand
Strand 2	b	167	169	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	3	4	first strand
Strand 2	c	18	19	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	125	128	first strand
Strand 2	c	196	200	parallel
Strand 3	c	157	161	parallel
Strand 4	c	181	182	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	90	91	first strand
Strand 2	d	34	37	anti-parallel
Strand 3	d	152	157	anti-parallel
Strand 4	d	127	132	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	66	70	first strand
Strand 2	d	82	88	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	8	10	first strand
Strand 2	e	52	54	anti-parallel
Strand 3	e	48	49	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	17	20	first strand
Strand 2	e	24	28	anti-parallel
Strand 3	e	33	37	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	44	45	first strand
Strand 2	e	56	57	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	124	127	first strand
Strand 2	e	133	138	anti-parallel
Strand 3	e	86	93	anti-parallel
Strand 4	e	164	166	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	98	102	first strand
Strand 2	e	105	109	anti-parallel
Strand 3	e	116	119	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	77	82	first strand
Strand 2	f	135	145	parallel
Strand 3	f	122	129	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	92	93	first strand
Strand 2	f	117	118	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	83	84	first strand
Strand 2	g	24	28	anti-parallel
Strand 3	g	107	112	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	53	54	first strand
Strand 2	h	66	67	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	20	22	first strand
Strand 2	i	57	60	parallel
Strand 3	i	125	127	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	76	80	first strand
Strand 2	i	87	91	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	7	10	first strand
Strand 2	j	16	24	anti-parallel
Strand 3	j	38	46	anti-parallel
Strand 4	j	57	64	anti-parallel
Strand 5	j	83	86	anti-parallel
Strand 6	j	7	10	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	12	13	first strand
Strand 2	j	97	98	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	69	70	first strand
Strand 2	j	76	77	anti-parallel
Strand 3	o	73	80	anti-parallel
Strand 4	o	63	70	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	101	103	first strand
Strand 2	j	120	122	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	78	81	first strand
Strand 2	k	112	115	parallel
Strand 3	k	130	131	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	125	128	first strand
Strand 2	k	145	148	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	63	66	first strand
Strand 2	l	102	107	anti-parallel
Strand 3	l	32	36	anti-parallel
Strand 4	l	129	133	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	41	43	first strand
Strand 2	l	89	96	anti-parallel
Strand 3	l	72	76	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	30	34	first strand
Strand 2	m	112	118	anti-parallel
Strand 3	m	98	105	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	51	55	first strand
Strand 2	n	39	44	anti-parallel
Strand 3	n	28	34	anti-parallel
Strand 4	n	89	92	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	43	47	first strand
Strand 2	o	30	38	anti-parallel
Strand 3	o	86	92	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	10	13	first strand
Strand 2	q	4	7	anti-parallel
Strand 3	q	38	39	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	19	23	first strand
Strand 2	q	88	94	anti-parallel
Strand 3	q	55	64	anti-parallel
Strand 4	q	32	35	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	68	72	first strand
Strand 2	q	81	85	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	10	11	first strand
Strand 2	r	95	108	anti-parallel
Strand 3	r	70	85	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	7	10	first strand
Strand 2	s	27	31	anti-parallel
Strand 3	s	78	84	anti-parallel
Strand 4	s	54	60	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	63	65	first strand
Strand 2	s	73	75	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	10	12	first strand
Strand 2	t	74	76	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	26	28	first strand
Strand 2	t	33	35	anti-parallel
Strand 3	t	69	70	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	41	42	first strand
Strand 2	t	65	66	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	89	90	first strand
Strand 2	t	103	104	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	36	37	first strand
Strand 2	u	50	53	anti-parallel
Strand 3	u	72	75	anti-parallel
Strand 4	u	65	68	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	60	61	first strand
Strand 2	u	92	97	parallel
Strand 3	u	81	86	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	13	17	first strand
Strand 2	v	25	29	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	33	37	first strand
Strand 2	v	47	51	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	14	16	first strand
Strand 2	x	34	36	parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	27	30	first strand
Strand 2	y	35	38	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	z	19	22	first strand
Strand 2	z	6	11	anti-parallel
Strand 3	z	43	49	anti-parallel
Strand 4	z	34	38	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PAT

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PAT