Analysis of interatomic Contacts of Structural Units in PDB entry:
7PAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PAV entry

There are 2 chains in PDB entry 7PAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 338HIS 720
B
 MET 338MET 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7PAV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
361 376Right-handed alpha
Helix 2
AA2
A
387 401Right-handed alpha
Helix 3
AA3
A
435 439Right-handed 310
Helix 4
AA4
A
442 452Right-handed alpha
Helix 5
AA5
A
509 517Right-handed alpha
Helix 6
AA6
A
524 539Right-handed alpha
Helix 7
AA7
A
572 581Right-handed alpha
Helix 8
AA8
A
636 640Right-handed 310
Helix 9
AA9
A
650 654Right-handed 310
Helix 10
AB1
A
659 663Right-handed 310
Helix 11
AB2
A
674 678Right-handed 310
Helix 12
AB3
A
710 720Right-handed 310
Helix 13
AB4
B
360 376Right-handed alpha
Helix 14
AB5
B
387 400Right-handed alpha
Helix 15
AB6
B
442 451Right-handed alpha
Helix 16
AB7
B
509 516Right-handed alpha
Helix 17
AB8
B
524 539Right-handed alpha
Helix 18
AB9
B
570 583Right-handed alpha
Helix 19
AC1
B
636 640Right-handed 310
Helix 20
AC2
B
650 655Right-handed 310
Helix 21
AC3
B
659 663Right-handed 310
Helix 22
AC4
B
674 678Right-handed 310
Helix 23
AC5
B
710 715Right-handed 310
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There are 7 sheets in PDB entry 7PAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 384first strand
Strand 2
A
343 349parallel
Strand 3
A
407 413parallel
Strand 4
A
456 462parallel
Strand 5
A
486 490parallel
Strand 6
A
549 552anti-parallel
Strand 7
B
549 552anti-parallel
Strand 8
B
486 490anti-parallel
Strand 9
B
456 462parallel
Strand 10
B
407 413parallel
Strand 11
B
343 349parallel
Strand 12
B
379 384parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 419first strand
Strand 2
A
422 425anti-parallel
Strand 3
A
440 441anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 593first strand
Strand 2
A
599 608anti-parallel
Strand 3
A
611 617anti-parallel
Strand 4
A
668 672anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 633first strand
Strand 2
A
683 689anti-parallel
Strand 3
A
700 706anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 419first strand
Strand 2
B
422 425anti-parallel
Strand 3
B
440 441anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
590 593first strand
Strand 2
B
599 608anti-parallel
Strand 3
B
611 620anti-parallel
Strand 4
B
668 672anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
627 633first strand
Strand 2
B
683 691anti-parallel
Strand 3
B
699 706anti-parallel
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