Analysis of interatomic Contacts of Structural Units in PDB entry:
7PAW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PAW entry

There are 2 chains in PDB entry 7PAW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 338HIS 720
B
 MET 338MET 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7PAW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
360 376Right-handed alpha
Helix 2
AA2
A
387 401Right-handed alpha
Helix 3
AA3
A
442 452Right-handed alpha
Helix 4
AA4
A
509 517Right-handed alpha
Helix 5
AA5
A
524 539Right-handed alpha
Helix 6
AA6
A
573 581Right-handed alpha
Helix 7
AA7
A
636 640Right-handed 310
Helix 8
AA8
A
674 678Right-handed 310
Helix 9
AA9
A
710 715Right-handed 310
Helix 10
AB1
A
716 720Right-handed 310
Helix 11
AB2
B
360 375Right-handed alpha
Helix 12
AB3
B
387 402Right-handed alpha
Helix 13
AB4
B
435 439Right-handed 310
Helix 14
AB5
B
442 451Right-handed alpha
Helix 15
AB6
B
509 519Right-handed alpha
Helix 16
AB7
B
524 539Right-handed alpha
Helix 17
AB8
B
570 583Right-handed alpha
Helix 18
AB9
B
636 640Right-handed 310
Helix 19
AC1
B
650 655Right-handed 310
Helix 20
AC2
B
659 663Right-handed 310
Helix 21
AC3
B
674 678Right-handed 310
Helix 22
AC4
B
710 715Right-handed 310
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There are 7 sheets in PDB entry 7PAW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 384first strand
Strand 2
A
343 349parallel
Strand 3
A
407 413parallel
Strand 4
A
456 462parallel
Strand 5
A
486 490parallel
Strand 6
A
549 552anti-parallel
Strand 7
B
549 552anti-parallel
Strand 8
B
486 490anti-parallel
Strand 9
B
456 462parallel
Strand 10
B
407 413parallel
Strand 11
B
343 349parallel
Strand 12
B
379 384parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 419first strand
Strand 2
A
422 425anti-parallel
Strand 3
A
440 441anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 593first strand
Strand 2
A
599 608anti-parallel
Strand 3
A
611 617anti-parallel
Strand 4
A
668 672anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 633first strand
Strand 2
A
683 688anti-parallel
Strand 3
A
701 706anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
416 419first strand
Strand 2
B
422 425anti-parallel
Strand 3
B
440 441anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
590 593first strand
Strand 2
B
599 608anti-parallel
Strand 3
B
611 620anti-parallel
Strand 4
B
668 672anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
627 633first strand
Strand 2
B
683 691anti-parallel
Strand 3
B
699 706anti-parallel
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