Analysis of interatomic Contacts of Structural Units in PDB entry:
7PB1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PB1 entry

There are 2 chains in PDB entry 7PB1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7ALA 326
B
 HIS 82LYS 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7PB1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 21Right-handed alpha
Helix 2
AA2
A
35 43Right-handed alpha
Helix 3
AA3
A
46 69Right-handed alpha
Helix 4
AA4
A
81 85Right-handed 310
Helix 5
AA5
A
86 107Right-handed alpha
Helix 6
AA6
A
109 115Right-handed alpha
Helix 7
AA7
A
123 127Right-handed 310
Helix 8
AA8
A
128 143Right-handed alpha
Helix 9
AA9
A
157 175Right-handed alpha
Helix 10
AB1
A
179 183Right-handed 310
Helix 11
AB2
A
184 190Right-handed alpha
Helix 12
AB3
A
191 197Right-handed 310
Helix 13
AB4
A
231 235Right-handed 310
Helix 14
AB5
A
236 285Right-handed alpha
Helix 15
AB6
A
293 321Right-handed alpha
Helix 16
AB7
B
83 94Right-handed alpha
Helix 17
AB8
B
113 128Right-handed alpha
Helix 18
AB9
B
139 144Right-handed alpha
Helix 19
AC1
B
144 156Right-handed alpha
Helix 20
AC2
B
157 159Right-handed 310
Helix 21
AC3
B
192 195Right-handed 310
Helix 22
AC4
B
196 213Right-handed alpha
Helix 23
AC5
B
217 221Right-handed 310
Helix 24
AC6
B
222 230Right-handed alpha
Helix 25
AC7
B
231 235Right-handed 310
Helix 26
AC8
B
273 286Right-handed alpha
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There are 2 sheets in PDB entry 7PB1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 121first strand
Strand 2
A
148 156parallel
Strand 3
A
72 79parallel
Strand 4
A
28 32parallel
Strand 5
A
202 205parallel
Strand 6
A
224 227parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 191first strand
Strand 2
B
131 136parallel
Strand 3
B
100 105parallel
Strand 4
B
240 244parallel
Strand 5
B
262 266parallel
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