Analysis of interatomic Contacts of Structural Units in PDB entry:
7PB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PB8 entry

There are 5 chains in PDB entry 7PB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
O
 ASN 89ARG 289
Q
 GLU 153SER 268
U
 LYS 315GLN 417
P
 SER 53CYS 283
R
 ASP 84PHE 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7PB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
O
94 105Right-handed alpha
Helix 2
AA2
O
107 112Right-handed alpha
Helix 3
AA3
O
160 169Right-handed alpha
Helix 4
AA4
O
172 201Right-handed alpha
Helix 5
AA5
O
261 278Right-handed alpha
Helix 6
AA6
O
279 284Right-handed alpha
Helix 7
AA7
Q
154 176Right-handed alpha
Helix 8
AA8
Q
176 199Right-handed alpha
Helix 9
AA9
Q
215 220Right-handed alpha
Helix 10
AB1
Q
223 232Right-handed alpha
Helix 11
AB2
Q
235 241Right-handed alpha
Helix 12
AB3
Q
242 248Right-handed alpha
Helix 13
AB4
Q
248 266Right-handed alpha
Helix 14
AB5
U
317 322Right-handed alpha
Helix 15
AB6
U
323 373Right-handed alpha
Helix 16
AB7
U
386 394Right-handed alpha
Helix 17
AB8
U
394 399Right-handed alpha
Helix 18
AB9
U
399 414Right-handed alpha
Helix 19
AC1
P
54 74Right-handed alpha
Helix 20
AC2
P
148 161Right-handed alpha
Helix 21
AC3
P
163 191Right-handed alpha
Helix 22
AC4
P
243 250Right-handed alpha
Helix 23
AC5
P
258 263Right-handed alpha
Helix 24
AC6
P
264 270Right-handed alpha
Helix 25
AC7
P
270 283Right-handed alpha
Helix 26
AC8
R
89 106Right-handed alpha
Helix 27
AC9
R
116 118Right-handed 310
Helix 28
AD1
R
119 124Right-handed alpha
Helix 29
AD2
R
130 133Right-handed 310
Helix 30
AD3
R
134 150Right-handed alpha
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There are 5 sheets in PDB entry 7PB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
114 117first strand
Strand 2
O
121 130anti-parallel
Strand 3
O
133 143anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
205 210first strand
Strand 2
O
217 223anti-parallel
Strand 3
O
232 238anti-parallel
Strand 4
O
249 251anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
77 81first strand
Strand 2
P
101 111anti-parallel
Strand 3
P
86 87anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
77 81first strand
Strand 2
P
101 111anti-parallel
Strand 3
P
114 124anti-parallel
Strand 4
P
135 142anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
195 196first strand
Strand 2
P
205 208anti-parallel
Strand 3
P
217 226anti-parallel
Strand 4
P
232 241anti-parallel
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