Analysis of interatomic Contacts of Structural Units in PDB entry:
7PBE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PBE entry

There are 9 chains in PDB entry 7PBE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	PRO 276
B	MET 0	MET 99
C	TYR 1	LEU 9
D	GLU 3	GLU 201
E	THR 2	ASP 243
F	GLY 1	PRO 276
G	MET 0	MET 99
H	TYR 1	LEU 9
I	GLU 3	PHE 21

There are 18 helices in PDB entry 7PBE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	85	Right-handed alpha
Helix 2	AA2	A	137	150	Right-handed alpha
Helix 3	AA3	A	151	161	Right-handed alpha
Helix 4	AA4	A	162	176	Right-handed alpha
Helix 5	AA5	D	79	83	Right-handed 310
Helix 6	AA6	E	83	87	Right-handed 310
Helix 7	AA7	E	130	138	Right-handed alpha
Helix 8	AA8	E	197	201	Right-handed alpha
Helix 9	AA9	F	56	86	Right-handed alpha
Helix 10	AB1	F	137	150	Right-handed alpha
Helix 11	AB2	F	151	161	Right-handed alpha
Helix 12	AB3	F	162	176	Right-handed alpha
Helix 13	AB4	I	79	83	Right-handed 310
Helix 14	AB5	J	59	62	Right-handed 310
Helix 15	AB6	J	69	73	Right-handed 310
Helix 16	AB7	J	83	87	Right-handed 310
Helix 17	AB8	J	130	138	Right-handed alpha
Helix 18	AB9	J	197	201	Right-handed alpha

There are 38 sheets in PDB entry 7PBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	18	28	anti-parallel
Strand 4	A	3	14	anti-parallel
Strand 5	A	94	103	anti-parallel
Strand 6	A	111	118	anti-parallel
Strand 7	A	121	126	anti-parallel
Strand 8	A	133	135	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	190	first strand
Strand 2	A	199	208	anti-parallel
Strand 3	A	241	249	anti-parallel
Strand 4	A	228	230	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	190	first strand
Strand 2	A	199	208	anti-parallel
Strand 3	A	241	249	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	219	first strand
Strand 2	A	257	262	anti-parallel
Strand 3	A	270	272	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	60	62	anti-parallel
Strand 5	D	55	56	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	64	65	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	103	108	parallel
Strand 3	D	84	91	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	44	49	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	103	108	parallel
Strand 3	D	84	91	anti-parallel
Strand 4	D	97	99	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	122	first strand
Strand 2	D	130	135	anti-parallel
Strand 3	D	170	175	anti-parallel
Strand 4	D	151	153	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	167	168	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	19	24	anti-parallel
Strand 3	E	75	79	anti-parallel
Strand 4	E	66	68	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	108	113	parallel
Strand 3	E	88	95	anti-parallel
Strand 4	E	31	37	anti-parallel
Strand 5	E	44	50	anti-parallel
Strand 6	E	53	57	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	108	113	parallel
Strand 3	E	88	95	anti-parallel
Strand 4	E	102	104	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	127	first strand
Strand 2	E	139	149	anti-parallel
Strand 3	E	187	196	anti-parallel
Strand 4	E	169	171	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	127	first strand
Strand 2	E	139	149	anti-parallel
Strand 3	E	187	196	anti-parallel
Strand 4	E	176	177	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	165	first strand
Strand 2	E	154	160	anti-parallel
Strand 3	E	206	213	anti-parallel
Strand 4	E	232	239	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	47	first strand
Strand 2	F	31	37	anti-parallel
Strand 3	F	18	28	anti-parallel
Strand 4	F	3	14	anti-parallel
Strand 5	F	94	103	anti-parallel
Strand 6	F	111	118	anti-parallel
Strand 7	F	121	126	anti-parallel
Strand 8	F	133	135	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	192	first strand
Strand 2	F	199	208	anti-parallel
Strand 3	F	241	249	anti-parallel
Strand 4	F	229	230	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	192	first strand
Strand 2	F	199	208	anti-parallel
Strand 3	F	241	249	anti-parallel
Strand 4	F	234	235	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	214	219	first strand
Strand 2	F	257	262	anti-parallel
Strand 3	F	270	273	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	11	first strand
Strand 2	G	21	30	anti-parallel
Strand 3	G	62	70	anti-parallel
Strand 4	G	50	51	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	11	first strand
Strand 2	G	21	30	anti-parallel
Strand 3	G	62	70	anti-parallel
Strand 4	G	55	56	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	45	first strand
Strand 2	G	36	41	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	91	94	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	6	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	60	62	anti-parallel
Strand 5	I	55	56	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	6	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	64	65	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	14	first strand
Strand 2	I	103	108	parallel
Strand 3	I	84	91	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	49	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	14	first strand
Strand 2	I	103	108	parallel
Strand 3	I	84	91	anti-parallel
Strand 4	I	97	99	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	117	121	first strand
Strand 2	I	129	135	anti-parallel
Strand 3	I	170	176	anti-parallel
Strand 4	I	152	153	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	159	160	first strand
Strand 2	I	167	168	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	7	first strand
Strand 2	J	19	24	anti-parallel
Strand 3	J	75	79	anti-parallel
Strand 4	J	66	68	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	14	first strand
Strand 2	J	108	113	parallel
Strand 3	J	88	95	anti-parallel
Strand 4	J	31	37	anti-parallel
Strand 5	J	44	50	anti-parallel
Strand 6	J	53	57	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	14	first strand
Strand 2	J	108	113	parallel
Strand 3	J	88	95	anti-parallel
Strand 4	J	102	104	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	127	first strand
Strand 2	J	139	149	anti-parallel
Strand 3	J	187	196	anti-parallel
Strand 4	J	169	171	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	127	first strand
Strand 2	J	139	149	anti-parallel
Strand 3	J	187	196	anti-parallel
Strand 4	J	176	177	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	163	164	first strand
Strand 2	J	154	160	anti-parallel
Strand 3	J	206	213	anti-parallel
Strand 4	J	232	239	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PBE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PBE