Analysis of interatomic Contacts of Structural Units in PDB entry:
7PBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PBM entry

There are 10 chains in PDB entry 7PBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 19	THR 330
B	THR 19	THR 330
C	THR 19	ARG 331
D	THR 19	ARG 331
E	THR 19	THR 330
F	THR 19	THR 330
G	SER 156	LEU 203
H	ASP 158	HIS 207
U	G 1	G 15
V	C 2	C 16

There are107 helices in PDB entry 7PBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	49	Right-handed alpha
Helix 2	AA2	A	64	77	Right-handed alpha
Helix 3	AA3	A	90	100	Right-handed alpha
Helix 4	AA4	A	112	115	Right-handed 310
Helix 5	AA5	A	116	121	Right-handed alpha
Helix 6	AA6	A	122	127	Right-handed alpha
Helix 7	AA7	A	160	164	Right-handed 310
Helix 8	AA8	A	165	170	Right-handed alpha
Helix 9	AA9	A	182	198	Right-handed alpha
Helix 10	AB1	A	202	211	Right-handed alpha
Helix 11	AB2	A	216	234	Right-handed alpha
Helix 12	AB3	A	240	251	Right-handed alpha
Helix 13	AB4	A	259	274	Right-handed alpha
Helix 14	AB5	A	279	287	Right-handed alpha
Helix 15	AB6	A	290	297	Right-handed alpha
Helix 16	AB7	A	298	305	Right-handed alpha
Helix 17	AB8	A	318	326	Right-handed alpha
Helix 18	AB9	B	31	48	Right-handed alpha
Helix 19	AC1	B	64	77	Right-handed alpha
Helix 20	AC2	B	86	88	Right-handed 310
Helix 21	AC3	B	90	98	Right-handed alpha
Helix 22	AC4	B	112	115	Right-handed 310
Helix 23	AC5	B	116	130	Right-handed alpha
Helix 24	AC6	B	138	142	Right-handed 310
Helix 25	AC7	B	160	164	Right-handed 310
Helix 26	AC8	B	165	170	Right-handed alpha
Helix 27	AC9	B	182	197	Right-handed alpha
Helix 28	AD1	B	202	211	Right-handed alpha
Helix 29	AD2	B	216	234	Right-handed alpha
Helix 30	AD3	B	240	251	Right-handed alpha
Helix 31	AD4	B	259	272	Right-handed alpha
Helix 32	AD5	B	279	287	Right-handed alpha
Helix 33	AD6	B	290	297	Right-handed alpha
Helix 34	AD7	B	298	305	Right-handed alpha
Helix 35	AD8	B	318	326	Right-handed alpha
Helix 36	AD9	C	24	28	Right-handed 310
Helix 37	AE1	C	31	49	Right-handed alpha
Helix 38	AE2	C	64	77	Right-handed alpha
Helix 39	AE3	C	90	99	Right-handed alpha
Helix 40	AE4	C	112	115	Right-handed 310
Helix 41	AE5	C	116	130	Right-handed alpha
Helix 42	AE6	C	160	164	Right-handed 310
Helix 43	AE7	C	165	170	Right-handed alpha
Helix 44	AE8	C	182	197	Right-handed alpha
Helix 45	AE9	C	202	212	Right-handed alpha
Helix 46	AF1	C	216	234	Right-handed alpha
Helix 47	AF2	C	240	252	Right-handed alpha
Helix 48	AF3	C	259	273	Right-handed alpha
Helix 49	AF4	C	279	287	Right-handed alpha
Helix 50	AF5	C	290	298	Right-handed alpha
Helix 51	AF6	C	298	305	Right-handed alpha
Helix 52	AF7	C	318	326	Right-handed alpha
Helix 53	AF8	D	24	28	Right-handed 310
Helix 54	AF9	D	31	47	Right-handed alpha
Helix 55	AG1	D	64	77	Right-handed alpha
Helix 56	AG2	D	90	101	Right-handed alpha
Helix 57	AG3	D	112	115	Right-handed 310
Helix 58	AG4	D	116	129	Right-handed alpha
Helix 59	AG5	D	138	142	Right-handed 310
Helix 60	AG6	D	165	170	Right-handed alpha
Helix 61	AG7	D	182	194	Right-handed alpha
Helix 62	AG8	D	202	211	Right-handed alpha
Helix 63	AG9	D	216	232	Right-handed alpha
Helix 64	AH1	D	240	251	Right-handed alpha
Helix 65	AH2	D	259	273	Right-handed alpha
Helix 66	AH3	D	279	288	Right-handed alpha
Helix 67	AH4	D	290	297	Right-handed alpha
Helix 68	AH5	D	298	305	Right-handed alpha
Helix 69	AH6	D	318	326	Right-handed alpha
Helix 70	AH7	E	31	48	Right-handed alpha
Helix 71	AH8	E	64	77	Right-handed alpha
Helix 72	AH9	E	86	88	Right-handed 310
Helix 73	AI1	E	90	100	Right-handed alpha
Helix 74	AI2	E	116	130	Right-handed alpha
Helix 75	AI3	E	165	170	Right-handed alpha
Helix 76	AI4	E	182	197	Right-handed alpha
Helix 77	AI5	E	202	213	Right-handed alpha
Helix 78	AI6	E	216	234	Right-handed alpha
Helix 79	AI7	E	240	251	Right-handed alpha
Helix 80	AI8	E	259	274	Right-handed alpha
Helix 81	AI9	E	279	287	Right-handed alpha
Helix 82	AJ1	E	290	298	Right-handed alpha
Helix 83	AJ2	E	298	305	Right-handed alpha
Helix 84	AJ3	E	318	326	Right-handed alpha
Helix 85	AJ4	F	31	48	Right-handed alpha
Helix 86	AJ5	F	64	77	Right-handed alpha
Helix 87	AJ6	F	86	88	Right-handed 310
Helix 88	AJ7	F	90	99	Right-handed alpha
Helix 89	AJ8	F	111	115	Right-handed 310
Helix 90	AJ9	F	116	130	Right-handed alpha
Helix 91	AK1	F	138	142	Right-handed 310
Helix 92	AK2	F	165	170	Right-handed alpha
Helix 93	AK3	F	182	197	Right-handed alpha
Helix 94	AK4	F	202	212	Right-handed alpha
Helix 95	AK5	F	216	234	Right-handed alpha
Helix 96	AK6	F	240	251	Right-handed alpha
Helix 97	AK7	F	259	273	Right-handed alpha
Helix 98	AK8	F	279	288	Right-handed alpha
Helix 99	AK9	F	290	298	Right-handed alpha
Helix 100	AL1	F	298	305	Right-handed alpha
Helix 101	AL2	F	318	326	Right-handed alpha
Helix 102	AL3	G	157	170	Right-handed alpha
Helix 103	AL4	G	173	183	Right-handed alpha
Helix 104	AL5	G	190	202	Right-handed alpha
Helix 105	AL6	H	159	170	Right-handed alpha
Helix 106	AL7	H	173	184	Right-handed alpha
Helix 107	AL8	H	190	199	Right-handed alpha

There are 20 sheets in PDB entry 7PBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	84	first strand
Strand 2	A	106	110	parallel
Strand 3	A	153	158	parallel
Strand 4	A	55	58	parallel
Strand 5	A	174	177	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	136	first strand
Strand 2	A	143	148	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	201	first strand
Strand 2	A	238	239	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	311	first strand
Strand 2	A	314	317	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	84	first strand
Strand 2	B	106	110	parallel
Strand 3	B	153	158	parallel
Strand 4	B	55	58	parallel
Strand 5	B	174	177	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	136	first strand
Strand 2	B	143	148	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	311	first strand
Strand 2	B	314	317	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	84	first strand
Strand 2	C	106	110	parallel
Strand 3	C	153	158	parallel
Strand 4	C	55	58	parallel
Strand 5	C	174	177	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	136	first strand
Strand 2	C	143	148	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	311	first strand
Strand 2	C	314	317	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	84	first strand
Strand 2	D	106	110	parallel
Strand 3	D	153	158	parallel
Strand 4	D	55	58	parallel
Strand 5	D	174	177	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	136	first strand
Strand 2	D	143	148	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	311	first strand
Strand 2	D	314	317	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	84	first strand
Strand 2	E	106	110	parallel
Strand 3	E	153	158	parallel
Strand 4	E	55	58	parallel
Strand 5	E	174	177	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	136	first strand
Strand 2	E	143	148	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	201	first strand
Strand 2	E	238	239	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	308	311	first strand
Strand 2	E	314	317	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	84	first strand
Strand 2	F	106	110	parallel
Strand 3	F	153	158	parallel
Strand 4	F	55	58	parallel
Strand 5	F	174	177	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	136	first strand
Strand 2	F	143	148	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	308	311	first strand
Strand 2	F	314	317	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PBM