Analysis of interatomic Contacts of Structural Units in PDB entry:
7PC9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PC9 entry

There are 3 chains in PDB entry 7PC9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 10ASP 416
A
 THR 10ASP 416
C
 LYS 199VAL 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 7PC9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
51 57Right-handed alpha
Helix 2
AA2
B
77 87Right-handed alpha
Helix 3
AA3
B
110 124Right-handed alpha
Helix 4
AA4
B
129 138Right-handed alpha
Helix 5
AA5
B
141 157Right-handed alpha
Helix 6
AA6
B
159 168Right-handed alpha
Helix 7
AA7
B
169 180Right-handed alpha
Helix 8
AA8
B
182 194Right-handed alpha
Helix 9
AA9
B
201 212Right-handed alpha
Helix 10
AB1
B
213 229Right-handed alpha
Helix 11
AB2
B
231 240Right-handed alpha
Helix 12
AB3
B
241 253Right-handed alpha
Helix 13
AB4
B
264 279Right-handed alpha
Helix 14
AB5
B
286 297Right-handed alpha
Helix 15
AB6
B
298 313Right-handed alpha
Helix 16
AB7
B
316 325Right-handed alpha
Helix 17
AB8
B
326 357Right-handed alpha
Helix 18
AB9
B
361 373Right-handed alpha
Helix 19
AC1
B
376 389Right-handed alpha
Helix 20
AC2
B
391 400Right-handed alpha
Helix 21
AC3
B
401 413Right-handed alpha
Helix 22
AC4
A
51 57Right-handed alpha
Helix 23
AC5
A
77 87Right-handed alpha
Helix 24
AC6
A
106 110Right-handed 310
Helix 25
AC7
A
111 125Right-handed alpha
Helix 26
AC8
A
129 138Right-handed alpha
Helix 27
AC9
A
141 157Right-handed alpha
Helix 28
AD1
A
159 168Right-handed alpha
Helix 29
AD2
A
169 180Right-handed alpha
Helix 30
AD3
A
182 196Right-handed alpha
Helix 31
AD4
A
201 212Right-handed alpha
Helix 32
AD5
A
213 229Right-handed alpha
Helix 33
AD6
A
231 240Right-handed alpha
Helix 34
AD7
A
241 253Right-handed alpha
Helix 35
AD8
A
264 279Right-handed alpha
Helix 36
AD9
A
286 297Right-handed alpha
Helix 37
AE1
A
298 313Right-handed alpha
Helix 38
AE2
A
316 325Right-handed alpha
Helix 39
AE3
A
326 342Right-handed alpha
Helix 40
AE4
A
342 357Right-handed alpha
Helix 41
AE5
A
361 373Right-handed alpha
Helix 42
AE6
A
376 389Right-handed alpha
Helix 43
AE7
A
391 400Right-handed alpha
Helix 44
AE8
A
401 413Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7PC9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 17first strand
Strand 2
B
91 97anti-parallel
Strand 3
B
64 68anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
42 47anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 17first strand
Strand 2
A
91 97anti-parallel
Strand 3
A
64 68anti-parallel
Strand 4
A
71 72anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
25 29anti-parallel
Strand 3
C
204 206anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il