Analysis of interatomic Contacts of Structural Units in PDB entry:
7PCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PCF entry

There are 4 chains in PDB entry 7PCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ARG 141
B
 VAL 1HIS 146
E
 MET 124ASN 463
F
 MET 124LYS 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 7PCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 18Right-handed alpha
Helix 2
AA2
A
19 36Right-handed alpha
Helix 3
AA3
A
36 42Right-handed alpha
Helix 4
AA4
A
52 72Right-handed alpha
Helix 5
AA5
A
75 84Right-handed alpha
Helix 6
AA6
A
94 113Right-handed alpha
Helix 7
AA7
A
118 140Right-handed alpha
Helix 8
AA8
B
4 18Right-handed alpha
Helix 9
AA9
B
19 35Right-handed alpha
Helix 10
AB1
B
35 42Right-handed alpha
Helix 11
AB2
B
50 57Right-handed alpha
Helix 12
AB3
B
57 77Right-handed alpha
Helix 13
AB4
B
99 119Right-handed alpha
Helix 14
AB5
B
123 143Right-handed alpha
Helix 15
AB6
E
129 135Right-handed alpha
Helix 16
AB7
E
163 170Right-handed alpha
Helix 17
AB8
E
269 285Right-handed alpha
Helix 18
AB9
E
287 302Right-handed alpha
Helix 19
AC1
E
303 333Right-handed alpha
Helix 20
AC2
E
361 367Right-handed alpha
Helix 21
AC3
E
451 463Right-handed alpha
Helix 22
AC4
F
128 135Right-handed alpha
Helix 23
AC5
F
163 169Right-handed alpha
Helix 24
AC6
F
269 285Right-handed alpha
Helix 25
AC7
F
287 301Right-handed alpha
Helix 26
AC8
F
303 335Right-handed alpha
Helix 27
AC9
F
361 367Right-handed alpha
Helix 28
AD1
F
451 463Right-handed alpha
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There are 8 sheets in PDB entry 7PCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
149 151first strand
Strand 2
E
174 178anti-parallel
Strand 3
E
183 189anti-parallel
Strand 4
E
220 226anti-parallel
Strand 5
E
210 215anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
153 156first strand
Strand 2
E
245 256anti-parallel
Strand 3
E
233 242anti-parallel
Strand 4
E
195 202anti-parallel
Strand 5
E
205 206anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
344 347first strand
Strand 2
E
372 376anti-parallel
Strand 3
E
379 386anti-parallel
Strand 4
E
413 419anti-parallel
Strand 5
E
403 408anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
350 354first strand
Strand 2
E
440 450anti-parallel
Strand 3
E
427 435anti-parallel
Strand 4
E
394 397anti-parallel
Strand 5
E
400 401anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
149 151first strand
Strand 2
F
170 178anti-parallel
Strand 3
F
183 190anti-parallel
Strand 4
F
220 226anti-parallel
Strand 5
F
210 215anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
153 156first strand
Strand 2
F
246 256anti-parallel
Strand 3
F
233 241anti-parallel
Strand 4
F
195 201anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
346 347first strand
Strand 2
F
372 373anti-parallel
Strand 3
F
381 387anti-parallel
Strand 4
F
413 419anti-parallel
Strand 5
F
403 408anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
350 354first strand
Strand 2
F
440 450anti-parallel
Strand 3
F
427 435anti-parallel
Strand 4
F
394 397anti-parallel
Strand 5
F
400 401anti-parallel
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