Analysis of interatomic Contacts of Structural Units in PDB entry:
7PCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PCW entry

There are 4 chains in PDB entry 7PCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3GLU 294
B
 GLY 3ILE 295
C
 GLY 3ILE 295
D
 GLY 3GLU 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 7PCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 49Right-handed 310
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
80 95Right-handed alpha
Helix 4
AA4
A
106 119Right-handed alpha
Helix 5
AA5
A
137 141Right-handed 310
Helix 6
AA6
A
142 153Right-handed alpha
Helix 7
AA7
A
156 163Right-handed alpha
Helix 8
AA8
A
166 171Right-handed alpha
Helix 9
AA9
A
173 177Right-handed 310
Helix 10
AB1
A
182 191Right-handed alpha
Helix 11
AB2
A
192 194Right-handed 310
Helix 12
AB3
A
195 198Right-handed 310
Helix 13
AB4
A
199 208Right-handed alpha
Helix 14
AB5
A
215 232Right-handed alpha
Helix 15
AB6
A
248 259Right-handed alpha
Helix 16
AB7
A
273 278Right-handed alpha
Helix 17
AB8
A
278 292Right-handed alpha
Helix 18
AB9
B
44 49Right-handed 310
Helix 19
AC1
B
51 56Right-handed alpha
Helix 20
AC2
B
80 95Right-handed alpha
Helix 21
AC3
B
106 119Right-handed alpha
Helix 22
AC4
B
142 144Right-handed 310
Helix 23
AC5
B
145 153Right-handed alpha
Helix 24
AC6
B
156 163Right-handed alpha
Helix 25
AC7
B
166 171Right-handed alpha
Helix 26
AC8
B
173 177Right-handed 310
Helix 27
AC9
B
182 191Right-handed alpha
Helix 28
AD1
B
192 194Right-handed 310
Helix 29
AD2
B
195 198Right-handed 310
Helix 30
AD3
B
199 209Right-handed alpha
Helix 31
AD4
B
215 232Right-handed alpha
Helix 32
AD5
B
248 259Right-handed alpha
Helix 33
AD6
B
273 278Right-handed alpha
Helix 34
AD7
B
278 291Right-handed alpha
Helix 35
AD8
C
44 49Right-handed 310
Helix 36
AD9
C
51 56Right-handed alpha
Helix 37
AE1
C
80 95Right-handed alpha
Helix 38
AE2
C
106 119Right-handed alpha
Helix 39
AE3
C
137 141Right-handed 310
Helix 40
AE4
C
142 144Right-handed 310
Helix 41
AE5
C
145 153Right-handed alpha
Helix 42
AE6
C
156 163Right-handed alpha
Helix 43
AE7
C
166 171Right-handed alpha
Helix 44
AE8
C
173 177Right-handed 310
Helix 45
AE9
C
182 191Right-handed alpha
Helix 46
AF1
C
192 194Right-handed 310
Helix 47
AF2
C
195 198Right-handed 310
Helix 48
AF3
C
199 209Right-handed alpha
Helix 49
AF4
C
215 232Right-handed alpha
Helix 50
AF5
C
248 259Right-handed alpha
Helix 51
AF6
C
273 277Right-handed 310
Helix 52
AF7
C
278 291Right-handed alpha
Helix 53
AF8
D
44 49Right-handed 310
Helix 54
AF9
D
51 55Right-handed 310
Helix 55
AG1
D
80 95Right-handed alpha
Helix 56
AG2
D
106 119Right-handed alpha
Helix 57
AG3
D
142 153Right-handed alpha
Helix 58
AG4
D
156 163Right-handed alpha
Helix 59
AG5
D
166 171Right-handed alpha
Helix 60
AG6
D
173 177Right-handed 310
Helix 61
AG7
D
182 191Right-handed alpha
Helix 62
AG8
D
192 194Right-handed 310
Helix 63
AG9
D
195 198Right-handed 310
Helix 64
AH1
D
199 208Right-handed alpha
Helix 65
AH2
D
215 232Right-handed alpha
Helix 66
AH3
D
248 259Right-handed alpha
Helix 67
AH4
D
273 278Right-handed alpha
Helix 68
AH5
D
278 292Right-handed alpha
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There are 4 sheets in PDB entry 7PCW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
20 27anti-parallel
Strand 3
A
61 64anti-parallel
Strand 4
A
35 38parallel
Strand 5
A
100 105parallel
Strand 6
A
123 129parallel
Strand 7
A
236 243parallel
Strand 8
A
262 270parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
61 64anti-parallel
Strand 4
B
35 38parallel
Strand 5
B
100 105parallel
Strand 6
B
123 129parallel
Strand 7
B
236 243parallel
Strand 8
B
262 270parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 17first strand
Strand 2
C
20 27anti-parallel
Strand 3
C
61 64anti-parallel
Strand 4
C
35 38parallel
Strand 5
C
100 105parallel
Strand 6
C
123 129parallel
Strand 7
C
236 243parallel
Strand 8
C
262 270parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 17first strand
Strand 2
D
20 27anti-parallel
Strand 3
D
61 64anti-parallel
Strand 4
D
35 38parallel
Strand 5
D
100 105parallel
Strand 6
D
123 129parallel
Strand 7
D
236 243parallel
Strand 8
D
262 270parallel
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