Analysis of interatomic Contacts of Structural Units in PDB entry:
7PD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PD1 entry

There are 2 chains in PDB entry 7PD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2LEU 367
B
 SER 1LEU 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 7PD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 12Right-handed alpha
Helix 2
AA2
A
15 23Right-handed alpha
Helix 3
AA3
A
24 34Right-handed alpha
Helix 4
AA4
A
38 46Right-handed alpha
Helix 5
AA5
A
47 52Right-handed 310
Helix 6
AA6
A
53 70Right-handed alpha
Helix 7
AA7
A
106 119Right-handed alpha
Helix 8
AA8
A
137 149Right-handed alpha
Helix 9
AA9
A
163 174Right-handed alpha
Helix 10
AB1
A
186 194Right-handed alpha
Helix 11
AB2
A
197 200Right-handed 310
Helix 12
AB3
A
201 207Right-handed alpha
Helix 13
AB4
A
207 215Right-handed alpha
Helix 14
AB5
A
230 249Right-handed alpha
Helix 15
AB6
A
275 290Right-handed alpha
Helix 16
AB7
A
302 310Right-handed alpha
Helix 17
AB8
A
326 330Right-handed 310
Helix 18
AB9
A
344 355Right-handed alpha
Helix 19
AC1
A
362 366Right-handed 310
Helix 20
AC2
B
4 11Right-handed alpha
Helix 21
AC3
B
15 23Right-handed alpha
Helix 22
AC4
B
24 33Right-handed alpha
Helix 23
AC5
B
38 46Right-handed alpha
Helix 24
AC6
B
47 52Right-handed 310
Helix 25
AC7
B
53 70Right-handed alpha
Helix 26
AC8
B
106 119Right-handed alpha
Helix 27
AC9
B
137 149Right-handed alpha
Helix 28
AD1
B
163 174Right-handed alpha
Helix 29
AD2
B
186 194Right-handed alpha
Helix 30
AD3
B
197 200Right-handed 310
Helix 31
AD4
B
201 207Right-handed alpha
Helix 32
AD5
B
207 215Right-handed alpha
Helix 33
AD6
B
230 249Right-handed alpha
Helix 34
AD7
B
275 290Right-handed alpha
Helix 35
AD8
B
302 310Right-handed alpha
Helix 36
AD9
B
326 330Right-handed 310
Helix 37
AE1
B
344 355Right-handed alpha
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There are 2 sheets in PDB entry 7PD1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 360first strand
Strand 2
A
72 82parallel
Strand 3
A
316 318parallel
Strand 4
A
294 297parallel
Strand 5
A
253 256parallel
Strand 6
A
219 222parallel
Strand 7
A
177 179parallel
Strand 8
A
154 158parallel
Strand 9
A
124 129parallel
Strand 10
A
72 82parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 360first strand
Strand 2
B
72 82parallel
Strand 3
B
316 318parallel
Strand 4
B
294 297parallel
Strand 5
B
253 256parallel
Strand 6
B
219 222parallel
Strand 7
B
177 179parallel
Strand 8
B
154 158parallel
Strand 9
B
124 129parallel
Strand 10
B
72 82parallel
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