Analysis of interatomic Contacts of Structural Units in PDB entry:
7PD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PD4 entry

There is 1 chain in PDB entry 7PD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 97GLY 1250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7PD4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 108Right-handed alpha
Helix 2
AA2
A
108 137Right-handed alpha
Helix 3
AA3
A
145 164Right-handed alpha
Helix 4
AA4
A
165 169Right-handed 310
Helix 5
AA5
A
172 192Right-handed alpha
Helix 6
AA6
A
219 237Right-handed alpha
Helix 7
AA7
A
241 260Right-handed alpha
Helix 8
AA8
A
279 336Right-handed alpha
Helix 9
AA9
A
339 348Right-handed alpha
Helix 10
AB1
A
351 359Right-handed alpha
Helix 11
AB2
A
402 407Right-handed alpha
Helix 12
AB3
A
413 434Right-handed alpha
Helix 13
AB4
A
457 478Right-handed alpha
Helix 14
AB5
A
511 523Right-handed alpha
Helix 15
AB6
A
532 540Right-handed alpha
Helix 16
AB7
A
782 807Right-handed alpha
Helix 17
AB8
A
817 844Right-handed alpha
Helix 18
AB9
A
849 858Right-handed alpha
Helix 19
AC1
A
861 875Right-handed alpha
Helix 20
AC2
A
875 885Right-handed alpha
Helix 21
AC3
A
891 907Right-handed alpha
Helix 22
AC4
A
908 911Right-handed 310
Helix 23
AC5
A
917 938Right-handed alpha
Helix 24
AC6
A
978 1037Right-handed alpha
Helix 25
AC7
A
1039 1048Right-handed alpha
Helix 26
AC8
A
1067 1072Right-handed alpha
Helix 27
AC9
A
1079 1098Right-handed alpha
Helix 28
AD1
A
1134 1157Right-handed alpha
Helix 29
AD2
A
1189 1201Right-handed alpha
Helix 30
AD3
A
1211 1219Right-handed alpha
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There are 4 sheets in PDB entry 7PD4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 441first strand
Strand 2
A
444 447anti-parallel
Strand 3
A
388 401anti-parallel
Strand 4
A
485 499anti-parallel
Strand 5
A
507 510anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 441first strand
Strand 2
A
444 447anti-parallel
Strand 3
A
388 401anti-parallel
Strand 4
A
485 499anti-parallel
Strand 5
A
529 531parallel
Strand 6
A
569 571anti-parallel
Strand 7
A
545 546anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1105 1107first strand
Strand 2
A
1116 1119anti-parallel
Strand 3
A
1052 1065anti-parallel
Strand 4
A
1164 1177anti-parallel
Strand 5
A
1185 1188anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1105 1107first strand
Strand 2
A
1116 1119anti-parallel
Strand 3
A
1052 1065anti-parallel
Strand 4
A
1164 1177anti-parallel
Strand 5
A
1207 1210parallel
Strand 6
A
1236 1242anti-parallel
Strand 7
A
1225 1232anti-parallel
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