Analysis of interatomic Contacts of Structural Units in PDB entry:
7PD7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PD7 entry

There are 3 chains in PDB entry 7PD7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	HIS 245
B	GLY -2	VAL 247
C	GLY -2	ASP 161

There are 45 helices in PDB entry 7PD7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	6	Right-handed 310
Helix 2	AA2	A	8	15	Right-handed alpha
Helix 3	AA3	A	17	34	Right-handed alpha
Helix 4	AA4	A	49	58	Right-handed alpha
Helix 5	AA5	A	68	80	Right-handed alpha
Helix 6	AA6	A	88	92	Right-handed 310
Helix 7	AA7	A	106	111	Right-handed 310
Helix 8	AA8	A	112	127	Right-handed alpha
Helix 9	AA9	A	140	144	Right-handed 310
Helix 10	AB1	A	204	215	Right-handed alpha
Helix 11	AB2	B	-2	6	Right-handed 310
Helix 12	AB3	B	8	10	Right-handed 310
Helix 13	AB4	B	11	16	Right-handed alpha
Helix 14	AB5	B	17	20	Right-handed 310
Helix 15	AB6	B	21	34	Right-handed alpha
Helix 16	AB7	B	49	58	Right-handed alpha
Helix 17	AB8	B	68	80	Right-handed alpha
Helix 18	AB9	B	88	92	Right-handed 310
Helix 19	AC1	B	106	111	Right-handed 310
Helix 20	AC2	B	112	127	Right-handed alpha
Helix 21	AC3	B	140	144	Right-handed 310
Helix 22	AC4	B	204	215	Right-handed alpha
Helix 23	AC5	C	2	6	Right-handed 310
Helix 24	AC6	C	8	15	Right-handed alpha
Helix 25	AC7	C	17	34	Right-handed alpha
Helix 26	AC8	C	49	58	Right-handed alpha
Helix 27	AC9	C	68	80	Right-handed alpha
Helix 28	AD1	C	88	92	Right-handed 310
Helix 29	AD2	C	106	111	Right-handed 310
Helix 30	AD3	C	112	127	Right-handed alpha
Helix 31	AD4	C	140	144	Right-handed 310
Helix 32	AD5	C	189	191	Right-handed 310
Helix 33	AD6	C	204	215	Right-handed alpha
Helix 34	AD7	D	-2	6	Right-handed 310
Helix 35	AD8	D	8	10	Right-handed 310
Helix 36	AD9	D	11	16	Right-handed alpha
Helix 37	AE1	D	17	20	Right-handed 310
Helix 38	AE2	D	21	34	Right-handed alpha
Helix 39	AE3	D	49	58	Right-handed alpha
Helix 40	AE4	D	68	80	Right-handed alpha
Helix 41	AE5	D	88	92	Right-handed 310
Helix 42	AE6	D	106	111	Right-handed 310
Helix 43	AE7	D	112	127	Right-handed alpha
Helix 44	AE8	D	140	144	Right-handed 310
Helix 45	AE9	D	204	215	Right-handed alpha

There are 8 sheets in PDB entry 7PD7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	86	first strand
Strand 2	A	61	66	parallel
Strand 3	A	40	44	parallel
Strand 4	A	98	103	parallel
Strand 5	A	128	137	parallel
Strand 6	A	238	242	anti-parallel
Strand 7	A	219	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	153	first strand
Strand 2	A	163	171	anti-parallel
Strand 3	A	178	187	anti-parallel
Strand 4	A	192	201	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	86	first strand
Strand 2	B	61	66	parallel
Strand 3	B	40	44	parallel
Strand 4	B	98	103	parallel
Strand 5	B	128	137	parallel
Strand 6	B	238	242	anti-parallel
Strand 7	B	219	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	163	171	anti-parallel
Strand 3	B	178	187	anti-parallel
Strand 4	B	192	201	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	86	first strand
Strand 2	C	61	66	parallel
Strand 3	C	40	44	parallel
Strand 4	C	98	103	parallel
Strand 5	C	128	137	parallel
Strand 6	C	238	242	anti-parallel
Strand 7	C	219	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	153	first strand
Strand 2	C	163	171	anti-parallel
Strand 3	C	178	187	anti-parallel
Strand 4	C	192	201	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	86	first strand
Strand 2	D	61	66	parallel
Strand 3	D	40	44	parallel
Strand 4	D	98	103	parallel
Strand 5	D	128	137	parallel
Strand 6	D	238	242	anti-parallel
Strand 7	D	219	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	153	first strand
Strand 2	D	163	171	anti-parallel
Strand 3	D	178	187	anti-parallel
Strand 4	D	192	201	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PD7

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PD7