Analysis of interatomic Contacts of Structural Units in PDB entry:
7PD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PD8 entry

There are 2 chains in PDB entry 7PD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 97GLY 1250
B
HIS 9ALA 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 7PD8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
99 108Right-handed alpha
Helix 2
AA2
A
108 136Right-handed alpha
Helix 3
AA3
A
145 163Right-handed alpha
Helix 4
AA4
A
171 193Right-handed alpha
Helix 5
AA5
A
219 236Right-handed alpha
Helix 6
AA6
A
241 260Right-handed alpha
Helix 7
AA7
A
279 336Right-handed alpha
Helix 8
AA8
A
339 347Right-handed alpha
Helix 9
AA9
A
402 407Right-handed alpha
Helix 10
AB1
A
413 434Right-handed alpha
Helix 11
AB2
A
457 481Right-handed alpha
Helix 12
AB3
A
511 523Right-handed alpha
Helix 13
AB4
A
533 537Right-handed alpha
Helix 14
AB5
A
784 808Right-handed alpha
Helix 15
AB6
A
817 844Right-handed alpha
Helix 16
AB7
A
850 857Right-handed alpha
Helix 17
AB8
A
858 860Right-handed 310
Helix 18
AB9
A
861 885Right-handed alpha
Helix 19
AC1
A
891 908Right-handed alpha
Helix 20
AC2
A
909 911Right-handed 310
Helix 21
AC3
A
917 936Right-handed alpha
Helix 22
AC4
A
978 1037Right-handed alpha
Helix 23
AC5
A
1038 1048Right-handed alpha
Helix 24
AC6
A
1066 1072Right-handed alpha
Helix 25
AC7
A
1079 1098Right-handed alpha
Helix 26
AC8
A
1099 1103Right-handed 310
Helix 27
AC9
A
1133 1157Right-handed alpha
Helix 28
AD1
A
1189 1201Right-handed alpha
Helix 29
AD2
A
1210 1219Right-handed alpha
Helix 30
AD3
B
13 25Right-handed alpha
Helix 31
AD4
B
26 36Right-handed alpha
Helix 32
AD5
B
49 58Right-handed alpha
Helix 33
AD6
B
59 70Right-handed alpha
Helix 34
AD7
B
82 89Right-handed alpha
Helix 35
AD8
B
92 102Right-handed alpha
Helix 36
AD9
B
115 123Right-handed alpha
Helix 37
AE1
B
125 135Right-handed alpha
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There are 6 sheets in PDB entry 7PD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
388 391first strand
Strand 2
A
494 499anti-parallel
Strand 3
A
507 510anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
436 439first strand
Strand 2
A
444 448anti-parallel
Strand 3
A
398 400anti-parallel
Strand 4
A
486 489anti-parallel
Strand 5
A
529 532parallel
Strand 6
A
568 571anti-parallel
Strand 7
A
545 546anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1052 1055first strand
Strand 2
A
1173 1177anti-parallel
Strand 3
A
1185 1188anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1064 1065first strand
Strand 2
A
1164 1165anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1106 1109first strand
Strand 2
A
1116 1118anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1208 1209first strand
Strand 2
A
1236 1242anti-parallel
Strand 3
A
1225 1232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il