Analysis of interatomic Contacts of Structural Units in PDB entry:
7PDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PDA entry

There are 2 chains in PDB entry 7PDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3LEU 479
B
 UNK 1UNK 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7PDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 19Right-handed alpha
Helix 2
AA2
A
33 45Right-handed alpha
Helix 3
AA3
A
71 79Right-handed alpha
Helix 4
AA4
A
86 101Right-handed alpha
Helix 5
AA5
A
112 116Right-handed 310
Helix 6
AA6
A
122 124Right-handed 310
Helix 7
AA7
A
125 129Right-handed 310
Helix 8
AA8
A
182 193Right-handed alpha
Helix 9
AA9
A
207 215Right-handed alpha
Helix 10
AB1
A
223 233Right-handed alpha
Helix 11
AB2
A
320 334Right-handed alpha
Helix 12
AB3
A
361 372Right-handed alpha
Helix 13
AB4
A
394 405Right-handed alpha
Helix 14
AB5
A
407 411Right-handed alpha
Helix 15
AB6
A
427 433Right-handed alpha
Helix 16
AB7
A
448 455Right-handed 310
Helix 17
AB8
A
462 473Right-handed alpha
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There are 5 sheets in PDB entry 7PDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
49 53parallel
Strand 3
A
63 66anti-parallel
Strand 4
A
301 304parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
148 152anti-parallel
Strand 3
A
198 205anti-parallel
Strand 4
A
254 260anti-parallel
Strand 5
A
284 296anti-parallel
Strand 6
A
267 270anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
173 176anti-parallel
Strand 3
A
284 296anti-parallel
Strand 4
A
117 120anti-parallel
Strand 5
B
3 4parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
247 249anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 345first strand
Strand 2
A
350 355anti-parallel
Strand 3
A
382 386parallel
Strand 4
A
440 444parallel
Strand 5
A
412 415anti-parallel
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