Analysis of interatomic Contacts of Structural Units in PDB entry:
7PDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PDD entry

There are 2 chains in PDB entry 7PDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 320GLY 1250
B
 HIS 9ALA 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7PDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
321 335Right-handed alpha
Helix 2
AA2
A
339 348Right-handed alpha
Helix 3
AA3
A
351 359Right-handed alpha
Helix 4
AA4
A
402 407Right-handed alpha
Helix 5
AA5
A
413 434Right-handed alpha
Helix 6
AA6
A
457 481Right-handed alpha
Helix 7
AA7
A
511 523Right-handed alpha
Helix 8
AA8
A
533 537Right-handed alpha
Helix 9
AA9
A
1021 1037Right-handed alpha
Helix 10
AB1
A
1038 1047Right-handed alpha
Helix 11
AB2
A
1067 1072Right-handed alpha
Helix 12
AB3
A
1079 1097Right-handed alpha
Helix 13
AB4
A
1133 1157Right-handed alpha
Helix 14
AB5
A
1189 1200Right-handed alpha
Helix 15
AB6
A
1210 1219Right-handed alpha
Helix 16
AB7
B
13 25Right-handed alpha
Helix 17
AB8
B
26 36Right-handed alpha
Helix 18
AB9
B
49 58Right-handed alpha
Helix 19
AC1
B
59 69Right-handed alpha
Helix 20
AC2
B
82 91Right-handed alpha
Helix 21
AC3
B
92 102Right-handed alpha
Helix 22
AC4
B
115 123Right-handed alpha
Helix 23
AC5
B
125 134Right-handed alpha
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There are 4 sheets in PDB entry 7PDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 439first strand
Strand 2
A
444 449anti-parallel
Strand 3
A
388 400anti-parallel
Strand 4
A
486 498anti-parallel
Strand 5
A
508 510anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 439first strand
Strand 2
A
444 449anti-parallel
Strand 3
A
388 400anti-parallel
Strand 4
A
486 498anti-parallel
Strand 5
A
529 532parallel
Strand 6
A
568 571anti-parallel
Strand 7
A
545 546anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1052 1055first strand
Strand 2
A
1173 1177anti-parallel
Strand 3
A
1185 1188anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1105 1109first strand
Strand 2
A
1114 1119anti-parallel
Strand 3
A
1060 1065anti-parallel
Strand 4
A
1164 1169anti-parallel
Strand 5
A
1207 1209parallel
Strand 6
A
1236 1242anti-parallel
Strand 7
A
1225 1232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il