Analysis of interatomic Contacts of Structural Units in PDB entry:
7PDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PDE entry

There are 2 chains in PDB entry 7PDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 97GLY 1250
B
 LYS 28GLN 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 7PDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 137Right-handed alpha
Helix 2
AA2
A
146 163Right-handed alpha
Helix 3
AA3
A
171 193Right-handed alpha
Helix 4
AA4
A
219 238Right-handed alpha
Helix 5
AA5
A
241 261Right-handed alpha
Helix 6
AA6
A
279 336Right-handed alpha
Helix 7
AA7
A
339 347Right-handed alpha
Helix 8
AA8
A
354 358Right-handed 310
Helix 9
AA9
A
402 407Right-handed alpha
Helix 10
AB1
A
413 434Right-handed alpha
Helix 11
AB2
A
457 480Right-handed alpha
Helix 12
AB3
A
511 523Right-handed alpha
Helix 13
AB4
A
532 537Right-handed alpha
Helix 14
AB5
A
782 808Right-handed alpha
Helix 15
AB6
A
817 843Right-handed alpha
Helix 16
AB7
A
849 858Right-handed alpha
Helix 17
AB8
A
862 881Right-handed alpha
Helix 18
AB9
A
882 884Right-handed 310
Helix 19
AC1
A
891 907Right-handed alpha
Helix 20
AC2
A
908 912Right-handed 310
Helix 21
AC3
A
916 936Right-handed alpha
Helix 22
AC4
A
977 1037Right-handed alpha
Helix 23
AC5
A
1038 1048Right-handed alpha
Helix 24
AC6
A
1067 1072Right-handed alpha
Helix 25
AC7
A
1079 1098Right-handed alpha
Helix 26
AC8
A
1100 1105Right-handed 310
Helix 27
AC9
A
1134 1156Right-handed alpha
Helix 28
AD1
A
1189 1200Right-handed alpha
Helix 29
AD2
A
1211 1220Right-handed alpha
Helix 30
AD3
B
32 39Right-handed alpha
Helix 31
AD4
B
52 65Right-handed alpha
Helix 32
AD5
B
89 111Right-handed alpha
Helix 33
AD6
B
121 123Right-handed 310
Helix 34
AD7
B
124 134Right-handed alpha
Helix 35
AD8
B
143 156Right-handed alpha
Helix 36
AD9
B
156 165Right-handed alpha
Helix 37
AE1
B
166 169Right-handed 310
Helix 38
AE2
B
174 182Right-handed alpha
Helix 39
AE3
B
193 199Right-handed alpha
Helix 40
AE4
B
228 238Right-handed 310
Helix 41
AE5
B
264 278Right-handed alpha
Helix 42
AE6
B
293 304Right-handed alpha
Helix 43
AE7
B
307 312Right-handed alpha
Helix 44
AE8
B
313 316Right-handed 310
Helix 45
AE9
B
331 351Right-handed alpha
Helix 46
AF1
B
368 388Right-handed alpha
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There are 5 sheets in PDB entry 7PDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 439first strand
Strand 2
A
444 449anti-parallel
Strand 3
A
387 400anti-parallel
Strand 4
A
486 498anti-parallel
Strand 5
A
508 510anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 531first strand
Strand 2
A
569 571anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1052 1055first strand
Strand 2
A
1173 1177anti-parallel
Strand 3
A
1185 1188anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1106 1111first strand
Strand 2
A
1114 1118anti-parallel
Strand 3
A
1059 1065anti-parallel
Strand 4
A
1164 1170anti-parallel
Strand 5
A
1207 1210parallel
Strand 6
A
1236 1242anti-parallel
Strand 7
A
1225 1232anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 213first strand
Strand 2
B
218 223anti-parallel
Strand 3
B
40 46parallel
Strand 4
B
243 249parallel
Strand 5
B
287 292parallel
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