Analysis of interatomic Contacts of Structural Units in PDB entry:
7PDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PDF entry

There are 2 chains in PDB entry 7PDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 320GLY 1250
B
 LYS 28GLN 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7PDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
321 336Right-handed alpha
Helix 2
AA2
A
339 346Right-handed alpha
Helix 3
AA3
A
354 359Right-handed alpha
Helix 4
AA4
A
402 407Right-handed alpha
Helix 5
AA5
A
413 434Right-handed alpha
Helix 6
AA6
A
457 478Right-handed alpha
Helix 7
AA7
A
511 523Right-handed alpha
Helix 8
AA8
A
532 537Right-handed alpha
Helix 9
AA9
A
1021 1037Right-handed alpha
Helix 10
AB1
A
1038 1048Right-handed alpha
Helix 11
AB2
A
1079 1098Right-handed alpha
Helix 12
AB3
A
1131 1133Right-handed 310
Helix 13
AB4
A
1134 1156Right-handed alpha
Helix 14
AB5
A
1190 1201Right-handed alpha
Helix 15
AB6
A
1211 1219Right-handed alpha
Helix 16
AB7
B
30 38Right-handed alpha
Helix 17
AB8
B
52 65Right-handed alpha
Helix 18
AB9
B
89 110Right-handed alpha
Helix 19
AC1
B
121 123Right-handed 310
Helix 20
AC2
B
124 134Right-handed alpha
Helix 21
AC3
B
143 156Right-handed alpha
Helix 22
AC4
B
156 165Right-handed alpha
Helix 23
AC5
B
174 184Right-handed alpha
Helix 24
AC6
B
185 187Right-handed 310
Helix 25
AC7
B
193 199Right-handed alpha
Helix 26
AC8
B
233 237Right-handed 310
Helix 27
AC9
B
264 278Right-handed alpha
Helix 28
AD1
B
293 304Right-handed alpha
Helix 29
AD2
B
307 312Right-handed alpha
Helix 30
AD3
B
313 316Right-handed 310
Helix 31
AD4
B
331 347Right-handed alpha
Helix 32
AD5
B
368 388Right-handed alpha
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There are 5 sheets in PDB entry 7PDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 439first strand
Strand 2
A
444 448anti-parallel
Strand 3
A
387 400anti-parallel
Strand 4
A
486 498anti-parallel
Strand 5
A
508 510anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 439first strand
Strand 2
A
444 448anti-parallel
Strand 3
A
387 400anti-parallel
Strand 4
A
486 498anti-parallel
Strand 5
A
529 531parallel
Strand 6
A
569 571anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1052 1055first strand
Strand 2
A
1173 1177anti-parallel
Strand 3
A
1185 1189anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1106 1109first strand
Strand 2
A
1115 1118anti-parallel
Strand 3
A
1059 1065anti-parallel
Strand 4
A
1164 1170anti-parallel
Strand 5
A
1207 1210parallel
Strand 6
A
1236 1242anti-parallel
Strand 7
A
1225 1232anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 213first strand
Strand 2
B
218 223anti-parallel
Strand 3
B
40 46parallel
Strand 4
B
243 246parallel
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