Analysis of interatomic Contacts of Structural Units in PDB entry:
7PDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PDG entry

There are 2 chains in PDB entry 7PDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 97GLY 1250
C
 HIS 9ALA 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 7PDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 107Right-handed alpha
Helix 2
AA2
A
108 136Right-handed alpha
Helix 3
AA3
A
146 163Right-handed alpha
Helix 4
AA4
A
171 193Right-handed alpha
Helix 5
AA5
A
219 236Right-handed alpha
Helix 6
AA6
A
241 260Right-handed alpha
Helix 7
AA7
A
279 338Right-handed alpha
Helix 8
AA8
A
339 347Right-handed alpha
Helix 9
AA9
A
351 358Right-handed alpha
Helix 10
AB1
A
404 408Right-handed 310
Helix 11
AB2
A
413 433Right-handed alpha
Helix 12
AB3
A
457 481Right-handed alpha
Helix 13
AB4
A
511 524Right-handed alpha
Helix 14
AB5
A
532 537Right-handed alpha
Helix 15
AB6
A
782 808Right-handed alpha
Helix 16
AB7
A
818 844Right-handed alpha
Helix 17
AB8
A
849 856Right-handed alpha
Helix 18
AB9
A
862 885Right-handed alpha
Helix 19
AC1
A
891 908Right-handed alpha
Helix 20
AC2
A
917 936Right-handed alpha
Helix 21
AC3
A
977 1037Right-handed alpha
Helix 22
AC4
A
1038 1046Right-handed alpha
Helix 23
AC5
A
1068 1072Right-handed 310
Helix 24
AC6
A
1079 1098Right-handed alpha
Helix 25
AC7
A
1133 1157Right-handed alpha
Helix 26
AC8
A
1190 1201Right-handed alpha
Helix 27
AC9
A
1210 1219Right-handed alpha
Helix 28
AD1
C
12 25Right-handed alpha
Helix 29
AD2
C
26 36Right-handed alpha
Helix 30
AD3
C
49 58Right-handed alpha
Helix 31
AD4
C
59 68Right-handed alpha
Helix 32
AD5
C
82 91Right-handed alpha
Helix 33
AD6
C
92 101Right-handed alpha
Helix 34
AD7
C
115 123Right-handed alpha
Helix 35
AD8
C
125 134Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7PDG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 441first strand
Strand 2
A
444 449anti-parallel
Strand 3
A
388 400anti-parallel
Strand 4
A
486 499anti-parallel
Strand 5
A
507 510anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 531first strand
Strand 2
A
569 571anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1105 1111first strand
Strand 2
A
1114 1119anti-parallel
Strand 3
A
1052 1065anti-parallel
Strand 4
A
1164 1177anti-parallel
Strand 5
A
1185 1189anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1105 1111first strand
Strand 2
A
1114 1119anti-parallel
Strand 3
A
1052 1065anti-parallel
Strand 4
A
1164 1177anti-parallel
Strand 5
A
1207 1209parallel
Strand 6
A
1236 1242anti-parallel
Strand 7
A
1225 1232anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il