Analysis of interatomic Contacts of Structural Units in PDB entry:
7PDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PDJ entry

There are 6 chains in PDB entry 7PDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 170
B
 TYR 4LEU 170
C
 SER 0LEU 170
D
 SER 0LEU 170
E
 THR 3THR 169
F
 SER 0LEU 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 7PDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 13Right-handed alpha
Helix 2
AA2
A
15 26Right-handed alpha
Helix 3
AA3
A
34 47Right-handed alpha
Helix 4
AA4
A
52 64Right-handed alpha
Helix 5
AA5
A
65 72Right-handed alpha
Helix 6
AA6
A
76 87Right-handed alpha
Helix 7
AA7
A
92 104Right-handed alpha
Helix 8
AA8
A
106 117Right-handed alpha
Helix 9
AA9
A
129 140Right-handed alpha
Helix 10
AB1
A
148 157Right-handed alpha
Helix 11
AB2
A
160 162Right-handed 310
Helix 12
AB3
A
163 170Right-handed alpha
Helix 13
AB4
B
5 14Right-handed alpha
Helix 14
AB5
B
15 26Right-handed alpha
Helix 15
AB6
B
34 47Right-handed alpha
Helix 16
AB7
B
55 64Right-handed alpha
Helix 17
AB8
B
67 72Right-handed alpha
Helix 18
AB9
B
76 84Right-handed alpha
Helix 19
AC1
B
92 104Right-handed alpha
Helix 20
AC2
B
106 117Right-handed alpha
Helix 21
AC3
B
129 140Right-handed alpha
Helix 22
AC4
B
148 157Right-handed alpha
Helix 23
AC5
B
160 162Right-handed 310
Helix 24
AC6
B
163 170Right-handed alpha
Helix 25
AC7
C
3 13Right-handed alpha
Helix 26
AC8
C
15 26Right-handed alpha
Helix 27
AC9
C
34 47Right-handed alpha
Helix 28
AD1
C
52 64Right-handed alpha
Helix 29
AD2
C
67 72Right-handed alpha
Helix 30
AD3
C
76 87Right-handed alpha
Helix 31
AD4
C
92 104Right-handed alpha
Helix 32
AD5
C
106 116Right-handed alpha
Helix 33
AD6
C
129 140Right-handed alpha
Helix 34
AD7
C
148 157Right-handed alpha
Helix 35
AD8
C
160 162Right-handed 310
Helix 36
AD9
C
163 170Right-handed alpha
Helix 37
AE1
D
3 13Right-handed alpha
Helix 38
AE2
D
17 26Right-handed alpha
Helix 39
AE3
D
34 48Right-handed alpha
Helix 40
AE4
D
52 64Right-handed alpha
Helix 41
AE5
D
65 70Right-handed alpha
Helix 42
AE6
D
76 87Right-handed alpha
Helix 43
AE7
D
92 104Right-handed alpha
Helix 44
AE8
D
106 117Right-handed alpha
Helix 45
AE9
D
129 140Right-handed alpha
Helix 46
AF1
D
148 157Right-handed alpha
Helix 47
AF2
D
160 162Right-handed 310
Helix 48
AF3
D
163 170Right-handed alpha
Helix 49
AF4
E
4 13Right-handed alpha
Helix 50
AF5
E
16 26Right-handed alpha
Helix 51
AF6
E
34 47Right-handed alpha
Helix 52
AF7
E
52 64Right-handed alpha
Helix 53
AF8
E
65 69Right-handed 310
Helix 54
AF9
E
76 87Right-handed alpha
Helix 55
AG1
E
92 104Right-handed alpha
Helix 56
AG2
E
106 117Right-handed alpha
Helix 57
AG3
E
129 140Right-handed alpha
Helix 58
AG4
E
148 157Right-handed alpha
Helix 59
AG5
E
160 162Right-handed 310
Helix 60
AG6
E
163 168Right-handed alpha
Helix 61
AG7
F
3 13Right-handed alpha
Helix 62
AG8
F
15 26Right-handed alpha
Helix 63
AG9
F
34 49Right-handed alpha
Helix 64
AH1
F
52 62Right-handed alpha
Helix 65
AH2
F
66 72Right-handed alpha
Helix 66
AH3
F
82 87Right-handed alpha
Helix 67
AH4
F
92 104Right-handed alpha
Helix 68
AH5
F
106 117Right-handed alpha
Helix 69
AH6
F
129 140Right-handed alpha
Helix 70
AH7
F
148 157Right-handed alpha
Helix 71
AH8
F
160 162Right-handed 310
Helix 72
AH9
F
163 170Right-handed alpha
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There are no sheets in PDB entry 7PDJ
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