Analysis of interatomic Contacts of Structural Units in PDB entry:
7PDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PDO entry

There is 1 chain in PDB entry 7PDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7PDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 14Right-handed alpha
Helix 2
AA2
A
16 21Right-handed alpha
Helix 3
AA3
A
29 36Right-handed alpha
Helix 4
AA4
A
54 63Right-handed alpha
Helix 5
AA5
A
64 66Right-handed 310
Helix 6
AA6
A
83 91Right-handed alpha
Helix 7
AA7
A
98 102Right-handed alpha
Helix 8
AA8
A
110 122Right-handed alpha
Helix 9
AA9
A
140 151Right-handed alpha
Helix 10
AB1
A
178 184Right-handed alpha
Helix 11
AB2
A
184 193Right-handed alpha
Helix 12
AB3
A
194 199Right-handed 310
Helix 13
AB4
A
211 216Right-handed alpha
Helix 14
AB5
A
221 223Right-handed 310
Helix 15
AB6
A
224 238Right-handed alpha
Helix 16
AB7
A
256 275Right-handed alpha
Helix 17
AB8
A
308 313Right-handed 310
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There are 2 sheets in PDB entry 7PDO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
242 249parallel
Strand 3
A
157 163parallel
Strand 4
A
207 210anti-parallel
Strand 5
A
126 129anti-parallel
Strand 6
A
42 48parallel
Strand 7
A
72 77parallel
Strand 8
A
94 97parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 286first strand
Strand 2
A
297 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il