Analysis of interatomic Contacts of Structural Units in PDB entry:
7PDS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PDS entry

There are 7 chains in PDB entry 7PDS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 15	ASN 474
B	ASN 15	LYS 473
C	ASN 15	TYR 472
D	ASN 15	ASN 474
E	ASN 15	LYS 473
F	ASN 15	TYR 472
M	T 2	A 6

There are121 helices in PDB entry 7PDS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	21	Right-handed 310
Helix 2	AA2	A	33	44	Right-handed alpha
Helix 3	AA3	A	79	94	Right-handed alpha
Helix 4	AA4	A	99	113	Right-handed alpha
Helix 5	AA5	A	117	124	Right-handed alpha
Helix 6	AA6	A	136	142	Right-handed alpha
Helix 7	AA7	A	147	167	Right-handed alpha
Helix 8	AA8	A	185	195	Right-handed alpha
Helix 9	AA9	A	196	198	Right-handed 310
Helix 10	AB1	A	208	214	Right-handed alpha
Helix 11	AB2	A	225	231	Right-handed alpha
Helix 12	AB3	A	232	241	Right-handed alpha
Helix 13	AB4	A	289	293	Right-handed 310
Helix 14	AB5	A	296	301	Right-handed alpha
Helix 15	AB6	A	302	319	Right-handed alpha
Helix 16	AB7	A	329	343	Right-handed alpha
Helix 17	AB8	A	348	358	Right-handed alpha
Helix 18	AB9	A	369	378	Right-handed alpha
Helix 19	AC1	A	382	386	Right-handed 310
Helix 20	AC2	A	401	404	Right-handed alpha
Helix 21	AC3	A	412	419	Right-handed alpha
Helix 22	AC4	A	428	442	Right-handed alpha
Helix 23	AC5	A	467	471	Right-handed 310
Helix 24	AC6	B	16	21	Right-handed 310
Helix 25	AC7	B	33	44	Right-handed alpha
Helix 26	AC8	B	79	94	Right-handed alpha
Helix 27	AC9	B	99	114	Right-handed alpha
Helix 28	AD1	B	117	124	Right-handed alpha
Helix 29	AD2	B	136	142	Right-handed alpha
Helix 30	AD3	B	147	167	Right-handed alpha
Helix 31	AD4	B	185	195	Right-handed alpha
Helix 32	AD5	B	208	216	Right-handed alpha
Helix 33	AD6	B	225	230	Right-handed alpha
Helix 34	AD7	B	232	242	Right-handed alpha
Helix 35	AD8	B	302	319	Right-handed alpha
Helix 36	AD9	B	322	327	Right-handed alpha
Helix 37	AE1	B	329	343	Right-handed alpha
Helix 38	AE2	B	347	358	Right-handed alpha
Helix 39	AE3	B	369	378	Right-handed alpha
Helix 40	AE4	B	412	419	Right-handed alpha
Helix 41	AE5	B	428	442	Right-handed alpha
Helix 42	AE6	B	468	473	Right-handed alpha
Helix 43	AE7	C	16	21	Right-handed 310
Helix 44	AE8	C	33	44	Right-handed alpha
Helix 45	AE9	C	79	94	Right-handed alpha
Helix 46	AF1	C	99	114	Right-handed alpha
Helix 47	AF2	C	117	124	Right-handed alpha
Helix 48	AF3	C	136	141	Right-handed alpha
Helix 49	AF4	C	147	167	Right-handed alpha
Helix 50	AF5	C	185	195	Right-handed alpha
Helix 51	AF6	C	208	216	Right-handed alpha
Helix 52	AF7	C	225	230	Right-handed alpha
Helix 53	AF8	C	232	241	Right-handed alpha
Helix 54	AF9	C	296	301	Right-handed alpha
Helix 55	AG1	C	302	320	Right-handed alpha
Helix 56	AG2	C	322	327	Right-handed 310
Helix 57	AG3	C	329	343	Right-handed alpha
Helix 58	AG4	C	347	359	Right-handed alpha
Helix 59	AG5	C	369	378	Right-handed alpha
Helix 60	AG6	C	401	403	Right-handed 310
Helix 61	AG7	C	412	419	Right-handed alpha
Helix 62	AG8	C	430	442	Right-handed alpha
Helix 63	AG9	C	467	471	Right-handed 310
Helix 64	AH1	D	16	21	Right-handed 310
Helix 65	AH2	D	33	43	Right-handed alpha
Helix 66	AH3	D	44	48	Right-handed 310
Helix 67	AH4	D	79	94	Right-handed alpha
Helix 68	AH5	D	99	114	Right-handed alpha
Helix 69	AH6	D	117	124	Right-handed alpha
Helix 70	AH7	D	136	142	Right-handed alpha
Helix 71	AH8	D	147	167	Right-handed alpha
Helix 72	AH9	D	185	195	Right-handed alpha
Helix 73	AI1	D	208	214	Right-handed alpha
Helix 74	AI2	D	225	231	Right-handed alpha
Helix 75	AI3	D	232	242	Right-handed alpha
Helix 76	AI4	D	302	320	Right-handed alpha
Helix 77	AI5	D	322	327	Right-handed alpha
Helix 78	AI6	D	329	343	Right-handed alpha
Helix 79	AI7	D	348	358	Right-handed alpha
Helix 80	AI8	D	364	368	Right-handed 310
Helix 81	AI9	D	369	378	Right-handed alpha
Helix 82	AJ1	D	412	420	Right-handed alpha
Helix 83	AJ2	D	430	442	Right-handed alpha
Helix 84	AJ3	D	468	473	Right-handed alpha
Helix 85	AJ4	E	16	20	Right-handed 310
Helix 86	AJ5	E	33	43	Right-handed alpha
Helix 87	AJ6	E	79	95	Right-handed alpha
Helix 88	AJ7	E	99	114	Right-handed alpha
Helix 89	AJ8	E	117	124	Right-handed alpha
Helix 90	AJ9	E	136	142	Right-handed alpha
Helix 91	AK1	E	147	167	Right-handed alpha
Helix 92	AK2	E	185	195	Right-handed alpha
Helix 93	AK3	E	208	213	Right-handed alpha
Helix 94	AK4	E	225	231	Right-handed alpha
Helix 95	AK5	E	232	241	Right-handed alpha
Helix 96	AK6	E	302	320	Right-handed alpha
Helix 97	AK7	E	322	327	Right-handed 310
Helix 98	AK8	E	329	343	Right-handed alpha
Helix 99	AK9	E	348	358	Right-handed alpha
Helix 100	AL1	E	369	379	Right-handed alpha
Helix 101	AL2	E	412	420	Right-handed alpha
Helix 102	AL3	E	430	441	Right-handed alpha
Helix 103	AL4	E	468	473	Right-handed alpha
Helix 104	AL5	F	16	21	Right-handed 310
Helix 105	AL6	F	33	44	Right-handed alpha
Helix 106	AL7	F	45	48	Right-handed 310
Helix 107	AL8	F	79	94	Right-handed alpha
Helix 108	AL9	F	99	114	Right-handed alpha
Helix 109	AM1	F	117	124	Right-handed alpha
Helix 110	AM2	F	147	167	Right-handed alpha
Helix 111	AM3	F	185	195	Right-handed alpha
Helix 112	AM4	F	208	213	Right-handed 310
Helix 113	AM5	F	229	241	Right-handed alpha
Helix 114	AM6	F	302	319	Right-handed alpha
Helix 115	AM7	F	322	327	Right-handed 310
Helix 116	AM8	F	329	343	Right-handed alpha
Helix 117	AM9	F	349	359	Right-handed alpha
Helix 118	AN1	F	372	378	Right-handed alpha
Helix 119	AN2	F	412	419	Right-handed alpha
Helix 120	AN3	F	430	442	Right-handed alpha
Helix 121	AN4	F	468	472	Right-handed 310

There are 32 sheets in PDB entry 7PDS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	51	54	anti-parallel
Strand 3	A	115	116	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	223	first strand
Strand 2	A	263	268	parallel
Strand 3	A	175	179	parallel
Strand 4	A	283	287	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	258	259	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	405	406	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	453	first strand
Strand 2	A	460	463	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	54	first strand
Strand 2	B	59	61	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	219	223	parallel
Strand 3	B	263	268	parallel
Strand 4	B	175	179	parallel
Strand 5	B	283	287	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	256	259	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	405	406	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	411	first strand
Strand 2	B	460	465	anti-parallel
Strand 3	B	450	453	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	54	first strand
Strand 2	C	59	62	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	199	first strand
Strand 2	C	219	223	parallel
Strand 3	C	263	268	parallel
Strand 4	C	175	179	parallel
Strand 5	C	283	287	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	248	first strand
Strand 2	C	255	259	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	405	406	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	411	first strand
Strand 2	C	460	465	anti-parallel
Strand 3	C	450	453	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	51	54	anti-parallel
Strand 3	D	115	116	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	199	first strand
Strand 2	D	219	222	parallel
Strand 3	D	263	268	parallel
Strand 4	D	175	179	parallel
Strand 5	D	283	287	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	247	first strand
Strand 2	D	256	259	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	361	362	first strand
Strand 2	D	405	406	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	385	386	first strand
Strand 2	D	396	397	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	450	453	first strand
Strand 2	D	460	463	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	24	first strand
Strand 2	E	29	30	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	62	first strand
Strand 2	E	51	54	anti-parallel
Strand 3	E	115	116	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	199	first strand
Strand 2	E	219	222	parallel
Strand 3	E	263	268	parallel
Strand 4	E	175	180	parallel
Strand 5	E	283	288	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	244	248	first strand
Strand 2	E	255	259	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	361	362	first strand
Strand 2	E	405	406	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	410	411	first strand
Strand 2	E	460	466	anti-parallel
Strand 3	E	445	453	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	61	first strand
Strand 2	F	52	54	anti-parallel
Strand 3	F	115	116	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	199	first strand
Strand 2	F	219	224	parallel
Strand 3	F	263	268	parallel
Strand 4	F	175	179	parallel
Strand 5	F	283	287	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	361	362	first strand
Strand 2	F	405	406	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	386	387	first strand
Strand 2	F	394	395	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	410	411	first strand
Strand 2	F	460	465	anti-parallel
Strand 3	F	450	453	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PDS

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PDS