Analysis of interatomic Contacts of Structural Units in PDB entry:
7PDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PDT entry

There are 4 chains in PDB entry 7PDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 234GLU 461
U
 LYS 250ASP 260
B
 ASP 234GLU 461
V
 HIS 301GLN 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 7PDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
236 247Right-handed alpha
Helix 2
AA2
A
269 290Right-handed alpha
Helix 3
AA3
A
298 322Right-handed alpha
Helix 4
AA4
A
339 345Right-handed alpha
Helix 5
AA5
A
347 358Right-handed alpha
Helix 6
AA6
A
358 365Right-handed alpha
Helix 7
AA7
A
368 381Right-handed alpha
Helix 8
AA8
A
390 413Right-handed alpha
Helix 9
AA9
A
418 425Right-handed alpha
Helix 10
AB1
A
425 448Right-handed alpha
Helix 11
AB2
A
453 460Right-handed alpha
Helix 12
AB3
U
251 260Right-handed alpha
Helix 13
AB4
B
236 246Right-handed alpha
Helix 14
AB5
B
268 290Right-handed alpha
Helix 15
AB6
B
298 307Right-handed alpha
Helix 16
AB7
B
309 322Right-handed alpha
Helix 17
AB8
B
339 345Right-handed alpha
Helix 18
AB9
B
347 358Right-handed alpha
Helix 19
AC1
B
358 365Right-handed alpha
Helix 20
AC2
B
368 381Right-handed alpha
Helix 21
AC3
B
390 413Right-handed alpha
Helix 22
AC4
B
418 425Right-handed alpha
Helix 23
AC5
B
426 448Right-handed alpha
Helix 24
AC6
B
453 459Right-handed alpha
Helix 25
AC7
V
302 307Right-handed alpha
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There are 2 sheets in PDB entry 7PDT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 330first strand
Strand 2
A
336 338anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 330first strand
Strand 2
B
336 338anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il