Analysis of interatomic Contacts of Structural Units in PDB entry:
7PDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PDV entry

There are 5 chains in PDB entry 7PDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8GLY 114
C
 THR 8GLY 114
E
 THR 8GLY 114
F
 U 2 U 8
G
 THR 8GLY 114
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 7PDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 25Right-handed alpha
Helix 2
AA2
A
58 69Right-handed alpha
Helix 3
AA3
C
19 25Right-handed alpha
Helix 4
AA4
C
61 65Right-handed 310
Helix 5
AA5
E
19 24Right-handed alpha
Helix 6
AA6
E
58 67Right-handed alpha
Helix 7
AA7
G
19 24Right-handed alpha
Helix 8
AA8
G
58 70Right-handed alpha
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There are 10 sheets in PDB entry 7PDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
9 14anti-parallel
Strand 4
A
82 84anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
78 79anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 40first strand
Strand 2
C
50 55anti-parallel
Strand 3
C
9 14anti-parallel
Strand 4
C
83 84anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 75first strand
Strand 2
C
78 79anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 14first strand
Strand 2
E
50 54anti-parallel
Strand 3
E
38 39anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
74 75first strand
Strand 2
E
78 79anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
94 95first strand
Strand 2
E
102 103anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
37 39first strand
Strand 2
G
52 55anti-parallel
Strand 3
G
9 11anti-parallel
Strand 4
G
83 84anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
74 75first strand
Strand 2
G
78 79anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
94 96first strand
Strand 2
G
101 103anti-parallel
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