Analysis of interatomic Contacts of Structural Units in PDB entry:
7PDZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PDZ entry

There are 29 chains in PDB entry 7PDZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	MET 1	CYS 272
F	ASP 10	LYS 281
I	ILE 5	GLU 72
I	GLY 74	PHE 375
J	ILE 5	GLU 72
J	GLY 74	PHE 375
K	ILE 5	GLU 72
K	GLY 74	PHE 375
L	ILE 5	GLU 72
L	GLY 74	PHE 375
N	ILE 5	GLU 72
N	GLY 74	PHE 375
O	ILE 5	GLU 72
O	GLY 74	PHE 375
Q	ALA 2	TRP 3
Q	ALA 5	ALA 5
Q	CYS 7	CYS 7
R	ALA 2	TRP 3
R	ALA 5	ALA 5
R	CYS 7	CYS 7
S	ALA 2	TRP 3
S	ALA 5	ALA 5
S	CYS 7	CYS 7
T	ALA 2	TRP 3
T	ALA 5	ALA 5
T	CYS 7	CYS 7
P	ALA 2	TRP 3
P	ALA 5	ALA 5
P	CYS 7	CYS 7

There are147 helices in PDB entry 7PDZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	1	16	Right-handed alpha
Helix 2	AA2	E	17	19	Right-handed 310
Helix 3	AA3	E	20	32	Right-handed alpha
Helix 4	AA4	E	35	43	Right-handed alpha
Helix 5	AA5	E	90	113	Right-handed alpha
Helix 6	AA6	E	208	245	Right-handed alpha
Helix 7	AA7	E	246	272	Right-handed alpha
Helix 8	AA8	F	11	24	Right-handed alpha
Helix 9	AA9	F	28	40	Right-handed alpha
Helix 10	AB1	F	43	62	Right-handed alpha
Helix 11	AB2	F	115	134	Right-handed alpha
Helix 12	AB3	F	165	167	Right-handed 310
Helix 13	AB4	F	220	246	Right-handed alpha
Helix 14	AB5	F	249	259	Right-handed alpha
Helix 15	AB6	F	270	277	Right-handed alpha
Helix 16	AB7	I	44	48	Right-handed 310
Helix 17	AB8	I	55	61	Right-handed alpha
Helix 18	AB9	I	78	92	Right-handed alpha
Helix 19	AC1	I	97	101	Right-handed 310
Helix 20	AC2	I	112	126	Right-handed alpha
Helix 21	AC3	I	137	145	Right-handed alpha
Helix 22	AC4	I	172	175	Right-handed 310
Helix 23	AC5	I	181	196	Right-handed alpha
Helix 24	AC6	I	202	214	Right-handed alpha
Helix 25	AC7	I	222	233	Right-handed alpha
Helix 26	AC8	I	234	237	Right-handed 310
Helix 27	AC9	I	252	263	Right-handed alpha
Helix 28	AD1	I	264	268	Right-handed 310
Helix 29	AD2	I	273	283	Right-handed alpha
Helix 30	AD3	I	284	285	Right-handed 310
Helix 31	AD4	I	286	288	Right-handed 310
Helix 32	AD5	I	289	295	Right-handed alpha
Helix 33	AD6	I	301	306	Right-handed 310
Helix 34	AD7	I	308	321	Right-handed alpha
Helix 35	AD8	I	337	347	Right-handed alpha
Helix 36	AD9	I	349	356	Right-handed alpha
Helix 37	AE1	I	359	366	Right-handed alpha
Helix 38	AE2	I	367	369	Right-handed 310
Helix 39	AE3	I	370	375	Right-handed alpha
Helix 40	AE4	J	44	48	Right-handed 310
Helix 41	AE5	J	55	61	Right-handed alpha
Helix 42	AE6	J	78	92	Right-handed alpha
Helix 43	AE7	J	97	101	Right-handed 310
Helix 44	AE8	J	112	126	Right-handed alpha
Helix 45	AE9	J	137	145	Right-handed alpha
Helix 46	AF1	J	172	175	Right-handed 310
Helix 47	AF2	J	181	196	Right-handed alpha
Helix 48	AF3	J	202	217	Right-handed alpha
Helix 49	AF4	J	222	231	Right-handed alpha
Helix 50	AF5	J	233	237	Right-handed 310
Helix 51	AF6	J	251	260	Right-handed alpha
Helix 52	AF7	J	261	262	Right-handed 310
Helix 53	AF8	J	263	268	Right-handed 310
Helix 54	AF9	J	273	283	Right-handed alpha
Helix 55	AG1	J	289	295	Right-handed alpha
Helix 56	AG2	J	301	306	Right-handed 310
Helix 57	AG3	J	308	321	Right-handed alpha
Helix 58	AG4	J	337	348	Right-handed alpha
Helix 59	AG5	J	351	355	Right-handed 310
Helix 60	AG6	J	359	366	Right-handed alpha
Helix 61	AG7	J	369	374	Right-handed alpha
Helix 62	AG8	K	44	48	Right-handed 310
Helix 63	AG9	K	55	61	Right-handed alpha
Helix 64	AH1	K	78	92	Right-handed alpha
Helix 65	AH2	K	97	101	Right-handed 310
Helix 66	AH3	K	112	126	Right-handed alpha
Helix 67	AH4	K	137	146	Right-handed alpha
Helix 68	AH5	K	172	175	Right-handed 310
Helix 69	AH6	K	181	195	Right-handed alpha
Helix 70	AH7	K	202	216	Right-handed alpha
Helix 71	AH8	K	222	233	Right-handed alpha
Helix 72	AH9	K	257	262	Right-handed 310
Helix 73	AI1	K	263	268	Right-handed 310
Helix 74	AI2	K	273	285	Right-handed alpha
Helix 75	AI3	K	289	295	Right-handed alpha
Helix 76	AI4	K	301	306	Right-handed 310
Helix 77	AI5	K	308	321	Right-handed alpha
Helix 78	AI6	K	334	338	Right-handed 310
Helix 79	AI7	K	341	349	Right-handed alpha
Helix 80	AI8	K	350	355	Right-handed 310
Helix 81	AI9	K	359	366	Right-handed alpha
Helix 82	AJ1	K	367	372	Right-handed 310
Helix 83	AJ2	L	44	48	Right-handed 310
Helix 84	AJ3	L	55	61	Right-handed alpha
Helix 85	AJ4	L	78	92	Right-handed alpha
Helix 86	AJ5	L	97	101	Right-handed 310
Helix 87	AJ6	L	112	126	Right-handed alpha
Helix 88	AJ7	L	137	145	Right-handed alpha
Helix 89	AJ8	L	172	175	Right-handed 310
Helix 90	AJ9	L	181	196	Right-handed alpha
Helix 91	AK1	L	202	215	Right-handed alpha
Helix 92	AK2	L	222	233	Right-handed alpha
Helix 93	AK3	L	252	260	Right-handed alpha
Helix 94	AK4	L	261	262	Right-handed 310
Helix 95	AK5	L	263	268	Right-handed 310
Helix 96	AK6	L	273	285	Right-handed alpha
Helix 97	AK7	L	290	295	Right-handed alpha
Helix 98	AK8	L	301	306	Right-handed 310
Helix 99	AK9	L	308	321	Right-handed alpha
Helix 100	AL1	L	334	336	Right-handed 310
Helix 101	AL2	L	337	349	Right-handed alpha
Helix 102	AL3	L	350	355	Right-handed 310
Helix 103	AL4	L	359	366	Right-handed alpha
Helix 104	AL5	L	367	372	Right-handed 310
Helix 105	AL6	N	44	48	Right-handed 310
Helix 106	AL7	N	55	61	Right-handed alpha
Helix 107	AL8	N	78	92	Right-handed alpha
Helix 108	AL9	N	97	101	Right-handed 310
Helix 109	AM1	N	112	126	Right-handed alpha
Helix 110	AM2	N	137	145	Right-handed alpha
Helix 111	AM3	N	172	175	Right-handed 310
Helix 112	AM4	N	181	196	Right-handed alpha
Helix 113	AM5	N	202	217	Right-handed alpha
Helix 114	AM6	N	222	234	Right-handed alpha
Helix 115	AM7	N	252	260	Right-handed alpha
Helix 116	AM8	N	261	262	Right-handed 310
Helix 117	AM9	N	263	268	Right-handed 310
Helix 118	AN1	N	273	284	Right-handed alpha
Helix 119	AN2	N	289	296	Right-handed alpha
Helix 120	AN3	N	301	306	Right-handed 310
Helix 121	AN4	N	308	321	Right-handed alpha
Helix 122	AN5	N	334	336	Right-handed 310
Helix 123	AN6	N	337	348	Right-handed alpha
Helix 124	AN7	N	349	355	Right-handed 310
Helix 125	AN8	N	359	366	Right-handed alpha
Helix 126	AN9	N	367	372	Right-handed 310
Helix 127	AO1	O	55	61	Right-handed alpha
Helix 128	AO2	O	78	92	Right-handed alpha
Helix 129	AO3	O	97	101	Right-handed 310
Helix 130	AO4	O	112	126	Right-handed alpha
Helix 131	AO5	O	137	144	Right-handed alpha
Helix 132	AO6	O	172	175	Right-handed 310
Helix 133	AO7	O	181	194	Right-handed alpha
Helix 134	AO8	O	195	197	Right-handed 310
Helix 135	AO9	O	202	213	Right-handed alpha
Helix 136	AP1	O	222	233	Right-handed alpha
Helix 137	AP2	O	234	237	Right-handed 310
Helix 138	AP3	O	251	263	Right-handed alpha
Helix 139	AP4	O	264	268	Right-handed 310
Helix 140	AP5	O	273	285	Right-handed alpha
Helix 141	AP6	O	289	295	Right-handed alpha
Helix 142	AP7	O	301	306	Right-handed 310
Helix 143	AP8	O	308	321	Right-handed alpha
Helix 144	AP9	O	337	349	Right-handed alpha
Helix 145	AQ1	O	350	355	Right-handed 310
Helix 146	AQ2	O	359	366	Right-handed alpha
Helix 147	AQ3	O	367	372	Right-handed 310

There are 37 sheets in PDB entry 7PDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	52	first strand
Strand 2	E	57	61	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	67	first strand
Strand 2	E	70	72	anti-parallel
Strand 3	E	79	80	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	124	first strand
Strand 2	E	127	137	anti-parallel
Strand 3	E	145	158	anti-parallel
Strand 4	E	164	179	anti-parallel
Strand 5	E	186	202	anti-parallel
Strand 6	F	203	217	anti-parallel
Strand 7	F	185	198	anti-parallel
Strand 8	F	169	181	anti-parallel
Strand 9	F	151	164	anti-parallel
Strand 10	F	140	148	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	73	75	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	87	first strand
Strand 2	F	94	98	anti-parallel
Strand 3	F	105	110	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	32	first strand
Strand 2	I	16	21	anti-parallel
Strand 3	I	8	11	anti-parallel
Strand 4	I	103	107	parallel
Strand 5	I	131	136	parallel
Strand 6	I	357	358	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	54	first strand
Strand 2	I	35	38	anti-parallel
Strand 3	I	65	68	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	169	170	first strand
Strand 2	I	160	166	anti-parallel
Strand 3	I	176	178	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	169	170	first strand
Strand 2	I	160	166	anti-parallel
Strand 3	I	150	155	anti-parallel
Strand 4	I	297	300	parallel
Strand 5	I	329	330	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	238	241	first strand
Strand 2	I	247	250	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	29	32	first strand
Strand 2	J	16	21	anti-parallel
Strand 3	J	8	11	anti-parallel
Strand 4	J	103	107	parallel
Strand 5	J	131	136	parallel
Strand 6	J	357	358	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	38	first strand
Strand 2	J	65	68	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	71	72	first strand
Strand 2	J	75	76	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	169	170	first strand
Strand 2	J	160	166	anti-parallel
Strand 3	J	176	178	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	169	170	first strand
Strand 2	J	160	166	anti-parallel
Strand 3	J	150	155	anti-parallel
Strand 4	J	297	300	parallel
Strand 5	J	329	330	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	238	241	first strand
Strand 2	J	247	250	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	32	first strand
Strand 2	K	16	21	anti-parallel
Strand 3	K	8	12	anti-parallel
Strand 4	K	103	107	parallel
Strand 5	K	131	136	parallel
Strand 6	K	357	358	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	54	first strand
Strand 2	K	35	38	anti-parallel
Strand 3	K	65	68	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	169	170	first strand
Strand 2	K	160	166	anti-parallel
Strand 3	K	150	155	anti-parallel
Strand 4	K	297	300	parallel
Strand 5	K	329	330	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	238	241	first strand
Strand 2	K	247	250	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	16	21	anti-parallel
Strand 3	L	8	11	anti-parallel
Strand 4	L	103	107	parallel
Strand 5	L	131	136	parallel
Strand 6	L	357	358	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	35	38	anti-parallel
Strand 3	L	65	68	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	71	72	first strand
Strand 2	L	75	76	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	169	170	first strand
Strand 2	L	160	166	anti-parallel
Strand 3	L	176	178	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	169	170	first strand
Strand 2	L	160	166	anti-parallel
Strand 3	L	150	155	anti-parallel
Strand 4	L	297	300	parallel
Strand 5	L	329	330	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	238	241	first strand
Strand 2	L	247	250	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	18	21	first strand
Strand 2	N	8	11	anti-parallel
Strand 3	N	103	107	parallel
Strand 4	N	131	136	parallel
Strand 5	N	357	358	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	53	54	first strand
Strand 2	N	35	38	anti-parallel
Strand 3	N	65	68	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	71	72	first strand
Strand 2	N	75	76	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	169	170	first strand
Strand 2	N	160	166	anti-parallel
Strand 3	N	176	178	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	169	170	first strand
Strand 2	N	160	166	anti-parallel
Strand 3	N	150	155	anti-parallel
Strand 4	N	297	300	parallel
Strand 5	N	329	330	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	239	241	first strand
Strand 2	N	247	249	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	29	32	first strand
Strand 2	O	16	21	anti-parallel
Strand 3	O	8	11	anti-parallel
Strand 4	O	103	107	parallel
Strand 5	O	131	136	parallel
Strand 6	O	357	358	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	71	72	first strand
Strand 2	O	75	76	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	169	170	first strand
Strand 2	O	160	166	anti-parallel
Strand 3	O	176	178	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	169	170	first strand
Strand 2	O	160	166	anti-parallel
Strand 3	O	150	154	anti-parallel
Strand 4	O	297	300	parallel
Strand 5	O	329	330	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	238	241	first strand
Strand 2	O	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PDZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PDZ