Analysis of interatomic Contacts of Structural Units in PDB entry:
7PED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PED entry

There are 2 chains in PDB entry 7PED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 20LEU 230
A
 GLY 20LEU 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7PED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
20 47Right-handed alpha
Helix 2
AA2
B
66 76Right-handed alpha
Helix 3
AA3
B
81 95Right-handed alpha
Helix 4
AA4
B
119 121Right-handed 310
Helix 5
AA5
B
127 144Right-handed alpha
Helix 6
AA6
B
167 177Right-handed alpha
Helix 7
AA7
B
182 196Right-handed alpha
Helix 8
AA8
B
226 230Right-handed 310
Helix 9
AA9
A
21 47Right-handed alpha
Helix 10
AB1
A
66 76Right-handed alpha
Helix 11
AB2
A
81 95Right-handed alpha
Helix 12
AB3
A
119 121Right-handed 310
Helix 13
AB4
A
127 144Right-handed alpha
Helix 14
AB5
A
167 177Right-handed alpha
Helix 15
AB6
A
182 196Right-handed alpha
Helix 16
AB7
A
226 230Right-handed 310
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There are 4 sheets in PDB entry 7PED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
58 65anti-parallel
Strand 3
A
114 117anti-parallel
Strand 4
B
98 100anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
58 65anti-parallel
Strand 3
B
114 117anti-parallel
Strand 4
A
98 100anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
159 166anti-parallel
Strand 3
B
214 217anti-parallel
Strand 4
B
199 201anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
159 166anti-parallel
Strand 3
A
214 217anti-parallel
Strand 4
A
199 201anti-parallel
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