Analysis of interatomic Contacts of Structural Units in PDB entry:
7PEE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PEE entry

There are 4 chains in PDB entry 7PEE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 32	PHE 268
B	ASP 32	SER 269
C	ASP 32	SER 269
D	ASP 32	PHE 268

There are 24 helices in PDB entry 7PEE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	52	Right-handed 310
Helix 2	AA2	A	71	81	Right-handed alpha
Helix 3	AA3	A	168	183	Right-handed alpha
Helix 4	AA4	A	187	189	Right-handed 310
Helix 5	AA5	A	208	212	Right-handed 310
Helix 6	AA6	A	218	231	Right-handed alpha
Helix 7	AA7	B	48	52	Right-handed 310
Helix 8	AA8	B	71	80	Right-handed alpha
Helix 9	AA9	B	168	183	Right-handed alpha
Helix 10	AB1	B	187	189	Right-handed 310
Helix 11	AB2	B	208	212	Right-handed 310
Helix 12	AB3	B	218	231	Right-handed alpha
Helix 13	AB4	C	48	52	Right-handed 310
Helix 14	AB5	C	71	80	Right-handed alpha
Helix 15	AB6	C	168	183	Right-handed alpha
Helix 16	AB7	C	187	189	Right-handed 310
Helix 17	AB8	C	208	212	Right-handed 310
Helix 18	AB9	C	218	231	Right-handed alpha
Helix 19	AC1	D	48	52	Right-handed 310
Helix 20	AC2	D	71	80	Right-handed alpha
Helix 21	AC3	D	168	183	Right-handed alpha
Helix 22	AC4	D	187	189	Right-handed 310
Helix 23	AC5	D	208	212	Right-handed 310
Helix 24	AC6	D	218	231	Right-handed alpha

There are 16 sheets in PDB entry 7PEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	54	57	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	99	first strand
Strand 2	D	253	262	anti-parallel
Strand 3	D	151	160	anti-parallel
Strand 4	D	200	206	anti-parallel
Strand 5	D	191	197	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	120	first strand
Strand 2	A	124	127	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	197	first strand
Strand 2	A	200	206	anti-parallel
Strand 3	A	151	160	anti-parallel
Strand 4	A	253	262	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	249	250	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	54	57	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	C	253	262	anti-parallel
Strand 3	C	151	160	anti-parallel
Strand 4	C	200	206	anti-parallel
Strand 5	C	191	197	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	120	first strand
Strand 2	B	124	127	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	197	first strand
Strand 2	B	200	206	anti-parallel
Strand 3	B	151	160	anti-parallel
Strand 4	B	253	262	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	249	250	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	54	57	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	120	first strand
Strand 2	C	124	127	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	246	first strand
Strand 2	C	249	251	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	45	first strand
Strand 2	D	54	57	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	120	first strand
Strand 2	D	124	127	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	246	first strand
Strand 2	D	249	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PEE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PEE