Analysis of interatomic Contacts of Structural Units in PDB entry:
7PFP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PFP entry

There are 3 chains in PDB entry 7PFP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 25	PHE 587
B	SER 444	PHE 587
C	ASP 25	SER 444

There are 18 helices in PDB entry 7PFP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	35	Right-handed 310
Helix 2	AA2	A	67	71	Right-handed 310
Helix 3	AA3	A	172	177	Right-handed alpha
Helix 4	AA4	A	182	186	Right-handed 310
Helix 5	AA5	A	206	210	Right-handed 310
Helix 6	AA6	A	318	322	Right-handed 310
Helix 7	AA7	A	324	330	Right-handed alpha
Helix 8	AA8	A	346	352	Right-handed alpha
Helix 9	AA9	A	387	391	Right-handed 310
Helix 10	AB1	C	31	35	Right-handed 310
Helix 11	AB2	C	67	71	Right-handed 310
Helix 12	AB3	C	172	177	Right-handed alpha
Helix 13	AB4	C	182	186	Right-handed 310
Helix 14	AB5	C	206	210	Right-handed 310
Helix 15	AB6	C	318	322	Right-handed 310
Helix 16	AB7	C	324	330	Right-handed alpha
Helix 17	AB8	C	346	352	Right-handed alpha
Helix 18	AB9	C	387	391	Right-handed 310

There are 29 sheets in PDB entry 7PFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	47	51	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	63	65	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	86	first strand
Strand 2	A	89	93	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	105	108	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	129	first strand
Strand 2	A	132	136	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	164	first strand
Strand 2	A	167	171	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	271	275	anti-parallel
Strand 3	A	255	267	anti-parallel
Strand 4	A	243	250	anti-parallel
Strand 5	A	227	232	anti-parallel
Strand 6	A	284	286	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	309	first strand
Strand 2	A	312	315	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	335	first strand
Strand 2	A	339	345	anti-parallel
Strand 3	A	377	383	anti-parallel
Strand 4	A	369	370	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	361	first strand
Strand 2	A	401	409	anti-parallel
Strand 3	A	392	394	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	361	first strand
Strand 2	A	401	409	anti-parallel
Strand 3	A	418	426	anti-parallel
Strand 4	B	445	453	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	B	563	572	anti-parallel
Strand 3	B	499	509	anti-parallel
Strand 4	B	520	524	anti-parallel
Strand 5	B	527	528	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	442	first strand
Strand 2	B	476	480	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	453	first strand
Strand 2	C	420	426	parallel
Strand 3	C	401	409	anti-parallel
Strand 4	C	358	361	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	453	first strand
Strand 2	C	420	426	parallel
Strand 3	C	401	409	anti-parallel
Strand 4	C	392	394	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	463	first strand
Strand 2	A	484	490	anti-parallel
Strand 3	A	546	551	anti-parallel
Strand 4	A	536	539	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	480	first strand
Strand 2	C	438	442	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	528	first strand
Strand 2	A	520	524	anti-parallel
Strand 3	A	499	509	anti-parallel
Strand 4	A	563	572	anti-parallel
Strand 5	C	430	434	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	463	first strand
Strand 2	B	484	490	anti-parallel
Strand 3	B	546	551	anti-parallel
Strand 4	B	536	539	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	555	first strand
Strand 2	C	413	414	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	44	first strand
Strand 2	C	47	51	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	63	65	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	86	first strand
Strand 2	C	89	93	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	105	108	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	132	136	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	164	first strand
Strand 2	C	167	171	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	271	275	anti-parallel
Strand 3	C	255	267	anti-parallel
Strand 4	C	243	250	anti-parallel
Strand 5	C	227	232	anti-parallel
Strand 6	C	284	286	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	309	first strand
Strand 2	C	312	315	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	335	first strand
Strand 2	C	339	345	anti-parallel
Strand 3	C	377	383	anti-parallel
Strand 4	C	369	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PFP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PFP