Analysis of interatomic Contacts of Structural Units in PDB entry:
7PGA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PGA entry

There are 4 chains in PDB entry 7PGA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 12ALA 354
B
 THR 6ALA 354
C
 ASP 15ALA 354
D
 ILE 14ALA 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 7PGA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
26 38Right-handed alpha
Helix 3
AA3
A
39 46Right-handed alpha
Helix 4
AA4
A
50 59Right-handed alpha
Helix 5
AA5
A
61 75Right-handed alpha
Helix 6
AA6
A
91 96Right-handed 310
Helix 7
AA7
A
102 107Right-handed alpha
Helix 8
AA8
A
111 117Right-handed alpha
Helix 9
AA9
A
118 121Right-handed 310
Helix 10
AB1
A
122 130Right-handed alpha
Helix 11
AB2
A
133 139Right-handed alpha
Helix 12
AB3
A
141 147Right-handed alpha
Helix 13
AB4
A
149 160Right-handed alpha
Helix 14
AB5
A
168 174Right-handed alpha
Helix 15
AB6
A
191 201Right-handed alpha
Helix 16
AB7
A
213 225Right-handed alpha
Helix 17
AB8
A
254 258Right-handed 310
Helix 18
AB9
A
259 272Right-handed alpha
Helix 19
AC1
A
294 310Right-handed alpha
Helix 20
AC2
A
315 326Right-handed alpha
Helix 21
AC3
B
10 25Right-handed alpha
Helix 22
AC4
B
26 39Right-handed alpha
Helix 23
AC5
B
39 46Right-handed alpha
Helix 24
AC6
B
50 59Right-handed alpha
Helix 25
AC7
B
61 75Right-handed alpha
Helix 26
AC8
B
89 94Right-handed alpha
Helix 27
AC9
B
102 107Right-handed alpha
Helix 28
AD1
B
111 117Right-handed alpha
Helix 29
AD2
B
118 121Right-handed 310
Helix 30
AD3
B
122 130Right-handed alpha
Helix 31
AD4
B
133 139Right-handed alpha
Helix 32
AD5
B
141 148Right-handed alpha
Helix 33
AD6
B
149 161Right-handed alpha
Helix 34
AD7
B
168 173Right-handed alpha
Helix 35
AD8
B
191 201Right-handed alpha
Helix 36
AD9
B
213 224Right-handed alpha
Helix 37
AE1
B
254 258Right-handed 310
Helix 38
AE2
B
259 273Right-handed alpha
Helix 39
AE3
B
295 310Right-handed alpha
Helix 40
AE4
B
315 326Right-handed alpha
Helix 41
AE5
C
16 25Right-handed alpha
Helix 42
AE6
C
26 39Right-handed alpha
Helix 43
AE7
C
39 46Right-handed alpha
Helix 44
AE8
C
50 59Right-handed alpha
Helix 45
AE9
C
61 75Right-handed alpha
Helix 46
AF1
C
91 96Right-handed 310
Helix 47
AF2
C
111 117Right-handed alpha
Helix 48
AF3
C
118 121Right-handed 310
Helix 49
AF4
C
122 130Right-handed alpha
Helix 50
AF5
C
133 139Right-handed alpha
Helix 51
AF6
C
141 149Right-handed alpha
Helix 52
AF7
C
149 161Right-handed alpha
Helix 53
AF8
C
168 173Right-handed alpha
Helix 54
AF9
C
191 201Right-handed alpha
Helix 55
AG1
C
213 224Right-handed alpha
Helix 56
AG2
C
254 258Right-handed 310
Helix 57
AG3
C
259 272Right-handed alpha
Helix 58
AG4
C
294 310Right-handed alpha
Helix 59
AG5
C
315 326Right-handed alpha
Helix 60
AG6
D
15 24Right-handed alpha
Helix 61
AG7
D
26 39Right-handed alpha
Helix 62
AG8
D
39 46Right-handed alpha
Helix 63
AG9
D
50 58Right-handed alpha
Helix 64
AH1
D
61 75Right-handed alpha
Helix 65
AH2
D
91 96Right-handed 310
Helix 66
AH3
D
102 107Right-handed alpha
Helix 67
AH4
D
111 117Right-handed alpha
Helix 68
AH5
D
118 121Right-handed 310
Helix 69
AH6
D
122 130Right-handed alpha
Helix 70
AH7
D
133 139Right-handed alpha
Helix 71
AH8
D
141 149Right-handed alpha
Helix 72
AH9
D
149 161Right-handed alpha
Helix 73
AI1
D
168 173Right-handed alpha
Helix 74
AI2
D
191 201Right-handed alpha
Helix 75
AI3
D
213 224Right-handed alpha
Helix 76
AI4
D
254 258Right-handed 310
Helix 77
AI5
D
259 272Right-handed alpha
Helix 78
AI6
D
294 308Right-handed alpha
Helix 79
AI7
D
316 326Right-handed alpha
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There are 9 sheets in PDB entry 7PGA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
86 88anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 235first strand
Strand 2
A
205 210parallel
Strand 3
A
182 186parallel
Strand 4
A
246 252parallel
Strand 5
A
274 284parallel
Strand 6
A
346 353anti-parallel
Strand 7
A
328 337anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
85 88anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 235first strand
Strand 2
B
205 210parallel
Strand 3
B
182 186parallel
Strand 4
B
246 252parallel
Strand 5
B
274 284parallel
Strand 6
B
347 353anti-parallel
Strand 7
B
328 334anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 82first strand
Strand 2
C
85 88anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 235first strand
Strand 2
C
205 210parallel
Strand 3
C
182 186parallel
Strand 4
C
246 252parallel
Strand 5
C
274 284parallel
Strand 6
C
346 353anti-parallel
Strand 7
C
328 337anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 82first strand
Strand 2
D
85 88anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
231 235first strand
Strand 2
D
205 210parallel
Strand 3
D
182 186parallel
Strand 4
D
246 252parallel
Strand 5
D
274 284parallel
Strand 6
D
347 353anti-parallel
Strand 7
D
328 333anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
286 287first strand
Strand 2
D
314 315parallel
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