Analysis of interatomic Contacts of Structural Units in PDB entry:
7PGM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PGM entry

There are 3 chains in PDB entry 7PGM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 214	ASP 670
B	HIS 214	ASP 670
C	LYS 213	VAL 648

There are 15 helices in PDB entry 7PGM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	292	297	Right-handed alpha
Helix 2	AA2	A	375	380	Right-handed alpha
Helix 3	AA3	A	568	574	Right-handed alpha
Helix 4	AA4	A	591	595	Right-handed 310
Helix 5	AA5	A	606	612	Right-handed alpha
Helix 6	AA6	B	292	297	Right-handed alpha
Helix 7	AA7	B	375	380	Right-handed 310
Helix 8	AA8	B	568	574	Right-handed alpha
Helix 9	AA9	B	591	595	Right-handed 310
Helix 10	AB1	B	606	612	Right-handed alpha
Helix 11	AB2	C	292	297	Right-handed alpha
Helix 12	AB3	C	374	380	Right-handed alpha
Helix 13	AB4	C	568	574	Right-handed alpha
Helix 14	AB5	C	591	595	Right-handed 310
Helix 15	AB6	C	606	612	Right-handed alpha

There are 29 sheets in PDB entry 7PGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	226	first strand
Strand 2	A	577	583	anti-parallel
Strand 3	A	562	567	anti-parallel
Strand 4	A	550	556	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	233	first strand
Strand 2	A	242	246	anti-parallel
Strand 3	A	250	254	anti-parallel
Strand 4	A	266	267	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	289	first strand
Strand 2	A	298	305	anti-parallel
Strand 3	A	317	326	anti-parallel
Strand 4	A	334	347	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	359	first strand
Strand 2	A	365	369	anti-parallel
Strand 3	A	391	395	anti-parallel
Strand 4	A	424	427	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	438	first strand
Strand 2	A	449	454	anti-parallel
Strand 3	A	463	467	anti-parallel
Strand 4	A	481	483	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	496	first strand
Strand 2	A	509	513	anti-parallel
Strand 3	A	518	523	anti-parallel
Strand 4	A	530	535	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	615	617	first strand
Strand 2	A	623	625	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	629	630	first strand
Strand 2	A	636	637	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	651	first strand
Strand 2	A	654	656	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	662	first strand
Strand 2	A	668	669	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	226	first strand
Strand 2	B	577	583	anti-parallel
Strand 3	B	562	567	anti-parallel
Strand 4	B	550	556	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	233	first strand
Strand 2	B	242	246	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	266	267	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	289	first strand
Strand 2	B	298	305	anti-parallel
Strand 3	B	317	326	anti-parallel
Strand 4	B	334	347	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	359	first strand
Strand 2	B	365	369	anti-parallel
Strand 3	B	391	395	anti-parallel
Strand 4	B	424	427	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	438	first strand
Strand 2	B	449	454	anti-parallel
Strand 3	B	464	469	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	496	first strand
Strand 2	B	509	513	anti-parallel
Strand 3	B	518	523	anti-parallel
Strand 4	B	530	535	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	615	617	first strand
Strand 2	B	623	625	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	648	651	first strand
Strand 2	B	654	656	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	661	662	first strand
Strand 2	B	668	669	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	226	first strand
Strand 2	C	577	583	anti-parallel
Strand 3	C	562	567	anti-parallel
Strand 4	C	550	556	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	233	first strand
Strand 2	C	242	246	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	266	267	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	289	first strand
Strand 2	C	298	305	anti-parallel
Strand 3	C	317	326	anti-parallel
Strand 4	C	334	347	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	359	first strand
Strand 2	C	365	369	anti-parallel
Strand 3	C	391	395	anti-parallel
Strand 4	C	424	427	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	438	first strand
Strand 2	C	449	454	anti-parallel
Strand 3	C	464	468	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	496	first strand
Strand 2	C	509	513	anti-parallel
Strand 3	C	518	523	anti-parallel
Strand 4	C	530	535	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	615	617	first strand
Strand 2	C	623	625	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	629	630	first strand
Strand 2	C	636	637	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	648	651	first strand
Strand 2	C	654	656	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	661	662	first strand
Strand 2	C	668	669	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PGM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PGM