Analysis of interatomic Contacts of Structural Units in PDB entry:
7PGQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PGQ entry

There are 2 chains in PDB entry 7PGQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	ASP 483	LEU 1953
N	SER 1954	GLY 2745

There are110 helices in PDB entry 7PGQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	483	503	Right-handed alpha
Helix 2	AA2	F	504	509	Right-handed alpha
Helix 3	AA3	F	521	531	Right-handed alpha
Helix 4	AA4	F	538	552	Right-handed alpha
Helix 5	AA5	F	554	559	Right-handed alpha
Helix 6	AA6	F	560	562	Right-handed 310
Helix 7	AA7	F	568	588	Right-handed alpha
Helix 8	AA8	F	592	618	Right-handed alpha
Helix 9	AA9	F	677	693	Right-handed alpha
Helix 10	AB1	F	699	709	Right-handed alpha
Helix 11	AB2	F	709	721	Right-handed alpha
Helix 12	AB3	F	723	728	Right-handed alpha
Helix 13	AB4	F	734	746	Right-handed alpha
Helix 14	AB5	F	751	764	Right-handed alpha
Helix 15	AB6	F	770	794	Right-handed alpha
Helix 16	AB7	F	832	847	Right-handed alpha
Helix 17	AB8	F	847	852	Right-handed alpha
Helix 18	AB9	F	889	903	Right-handed alpha
Helix 19	AC1	F	909	924	Right-handed alpha
Helix 20	AC2	F	929	943	Right-handed alpha
Helix 21	AC3	F	956	974	Right-handed alpha
Helix 22	AC4	F	978	984	Right-handed alpha
Helix 23	AC5	F	988	1001	Right-handed alpha
Helix 24	AC6	F	1005	1023	Right-handed alpha
Helix 25	AC7	F	1033	1046	Right-handed alpha
Helix 26	AC8	F	1047	1049	Right-handed 310
Helix 27	AC9	F	1052	1058	Right-handed alpha
Helix 28	AD1	F	1059	1062	Right-handed 310
Helix 29	AD2	F	1063	1080	Right-handed alpha
Helix 30	AD3	F	1094	1117	Right-handed alpha
Helix 31	AD4	F	1135	1156	Right-handed alpha
Helix 32	AD5	F	1160	1165	Right-handed alpha
Helix 33	AD6	F	1166	1170	Right-handed 310
Helix 34	AD7	F	1172	1189	Right-handed alpha
Helix 35	AD8	F	1195	1205	Right-handed alpha
Helix 36	AD9	F	1205	1213	Right-handed alpha
Helix 37	AE1	F	1221	1231	Right-handed alpha
Helix 38	AE2	F	1232	1234	Right-handed 310
Helix 39	AE3	F	1235	1250	Right-handed alpha
Helix 40	AE4	F	1252	1268	Right-handed alpha
Helix 41	AE5	F	1270	1277	Right-handed alpha
Helix 42	AE6	F	1279	1311	Right-handed alpha
Helix 43	AE7	F	1331	1353	Right-handed alpha
Helix 44	AE8	F	1358	1379	Right-handed alpha
Helix 45	AE9	F	1400	1413	Right-handed alpha
Helix 46	AF1	F	1413	1420	Right-handed alpha
Helix 47	AF2	F	1420	1425	Right-handed alpha
Helix 48	AF3	F	1432	1452	Right-handed alpha
Helix 49	AF4	F	1458	1463	Right-handed 310
Helix 50	AF5	F	1464	1484	Right-handed alpha
Helix 51	AF6	F	1500	1514	Right-handed alpha
Helix 52	AF7	F	1514	1525	Right-handed alpha
Helix 53	AF8	F	1530	1533	Right-handed 310
Helix 54	AF9	F	1534	1547	Right-handed alpha
Helix 55	AG1	F	1565	1576	Right-handed alpha
Helix 56	AG2	F	1577	1581	Right-handed 310
Helix 57	AG3	F	1583	1591	Right-handed alpha
Helix 58	AG4	F	1619	1632	Right-handed alpha
Helix 59	AG5	F	1655	1666	Right-handed alpha
Helix 60	AG6	F	1668	1673	Right-handed alpha
Helix 61	AG7	F	1683	1693	Right-handed alpha
Helix 62	AG8	F	1693	1698	Right-handed alpha
Helix 63	AG9	F	1699	1701	Right-handed 310
Helix 64	AH1	F	1711	1719	Right-handed alpha
Helix 65	AH2	F	1727	1734	Right-handed alpha
Helix 66	AH3	F	1816	1835	Right-handed alpha
Helix 67	AH4	F	1846	1849	Right-handed 310
Helix 68	AH5	F	1850	1862	Right-handed alpha
Helix 69	AH6	F	1866	1882	Right-handed alpha
Helix 70	AH7	F	1910	1919	Right-handed alpha
Helix 71	AH8	F	1922	1937	Right-handed alpha
Helix 72	AH9	F	1938	1950	Right-handed alpha
Helix 73	AI1	F	1951	1953	Right-handed 310
Helix 74	AI2	N	1958	1962	Right-handed 310
Helix 75	AI3	N	1967	1985	Right-handed alpha
Helix 76	AI4	N	1988	2001	Right-handed alpha
Helix 77	AI5	N	2003	2022	Right-handed alpha
Helix 78	AI6	N	2025	2042	Right-handed alpha
Helix 79	AI7	N	2042	2059	Right-handed alpha
Helix 80	AI8	N	2068	2073	Right-handed 310
Helix 81	AI9	N	2074	2090	Right-handed alpha
Helix 82	AJ1	N	2091	2093	Right-handed 310
Helix 83	AJ2	N	2095	2108	Right-handed alpha
Helix 84	AJ3	N	2115	2135	Right-handed alpha
Helix 85	AJ4	N	2142	2156	Right-handed alpha
Helix 86	AJ5	N	2158	2166	Right-handed alpha
Helix 87	AJ6	N	2172	2178	Right-handed alpha
Helix 88	AJ7	N	2198	2220	Right-handed alpha
Helix 89	AJ8	N	2224	2238	Right-handed alpha
Helix 90	AJ9	N	2244	2256	Right-handed alpha
Helix 91	AK1	N	2260	2281	Right-handed alpha
Helix 92	AK2	N	2288	2302	Right-handed alpha
Helix 93	AK3	N	2303	2305	Right-handed 310
Helix 94	AK4	N	2310	2324	Right-handed alpha
Helix 95	AK5	N	2327	2348	Right-handed alpha
Helix 96	AK6	N	2355	2363	Right-handed alpha
Helix 97	AK7	N	2367	2379	Right-handed alpha
Helix 98	AK8	N	2385	2393	Right-handed alpha
Helix 99	AK9	N	2395	2400	Right-handed 310
Helix 100	AL1	N	2402	2425	Right-handed alpha
Helix 101	AL2	N	2436	2442	Right-handed alpha
Helix 102	AL3	N	2446	2453	Right-handed alpha
Helix 103	AL4	N	2612	2630	Right-handed alpha
Helix 104	AL5	N	2632	2650	Right-handed alpha
Helix 105	AL6	N	2653	2656	Right-handed 310
Helix 106	AL7	N	2657	2672	Right-handed alpha
Helix 107	AL8	N	2674	2692	Right-handed alpha
Helix 108	AL9	N	2699	2707	Right-handed 310
Helix 109	AM1	N	2710	2715	Right-handed alpha
Helix 110	AM2	N	2728	2743	Right-handed alpha

There are 4 sheets in PDB entry 7PGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	945	946	first strand
Strand 2	F	950	951	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1594	1598	first strand
Strand 2	F	1604	1609	anti-parallel
Strand 3	F	1639	1644	parallel
Strand 4	F	1674	1680	parallel
Strand 5	F	1706	1708	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1780	1784	first strand
Strand 2	F	1761	1766	anti-parallel
Strand 3	F	1751	1757	anti-parallel
Strand 4	F	1739	1746	anti-parallel
Strand 5	F	1810	1813	anti-parallel
Strand 6	F	1798	1801	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1770	1772	first strand
Strand 2	F	1775	1777	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PGQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PGQ