Analysis of interatomic Contacts of Structural Units in PDB entry:
7PII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PII entry

There are 12 chains in PDB entry 7PII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 41LEU 139
B
 ASP 24GLY 101
C
 ALA 14ILE 111
D
 ARG 33SER 124
E
 GLY 46LEU 139
F
 LEU 22GLY 101
G
 LYS 15PRO 117
H
 ARG 33SER 124
I
 A -49 C 72
J
 G -72 A 50
K
 SER 515SER 535
L
 THR 514SER 535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7PII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 55Right-handed alpha
Helix 2
AA2
A
63 79Right-handed alpha
Helix 3
AA3
A
87 116Right-handed alpha
Helix 4
AA4
A
122 138Right-handed alpha
Helix 5
AA5
B
30 41Right-handed alpha
Helix 6
AA6
B
49 76Right-handed alpha
Helix 7
AA7
B
82 93Right-handed alpha
Helix 8
AA8
C
16 22Right-handed alpha
Helix 9
AA9
C
26 37Right-handed alpha
Helix 10
AB1
C
45 73Right-handed alpha
Helix 11
AB2
C
79 90Right-handed alpha
Helix 12
AB3
C
90 97Right-handed alpha
Helix 13
AB4
D
37 49Right-handed alpha
Helix 14
AB5
D
55 84Right-handed alpha
Helix 15
AB6
D
90 102Right-handed alpha
Helix 16
AB7
D
103 123Right-handed alpha
Helix 17
AB8
E
47 55Right-handed alpha
Helix 18
AB9
E
63 78Right-handed alpha
Helix 19
AC1
E
87 116Right-handed alpha
Helix 20
AC2
E
122 134Right-handed alpha
Helix 21
AC3
F
30 42Right-handed alpha
Helix 22
AC4
F
49 76Right-handed alpha
Helix 23
AC5
F
82 94Right-handed alpha
Helix 24
AC6
G
16 22Right-handed alpha
Helix 25
AC7
G
26 37Right-handed alpha
Helix 26
AC8
G
45 72Right-handed alpha
Helix 27
AC9
G
79 89Right-handed alpha
Helix 28
AD1
G
90 97Right-handed alpha
Helix 29
AD2
H
37 49Right-handed alpha
Helix 30
AD3
H
55 84Right-handed alpha
Helix 31
AD4
H
90 102Right-handed alpha
Helix 32
AD5
H
103 123Right-handed alpha
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There are 10 sheets in PDB entry 7PII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
B
80 81parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
B
45 46parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
G
100 101parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 78first strand
Strand 2
D
53 54parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 101first strand
Strand 2
F
96 97parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
85 86first strand
Strand 2
F
80 81parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
120 121first strand
Strand 2
F
45 46parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
42 43first strand
Strand 2
H
88 89parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
77 78first strand
Strand 2
H
53 54parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
516 517first strand
Strand 2
L
523 524anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il