Analysis of interatomic Contacts of Structural Units in PDB entry:
7PIM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PIM entry

There are 8 chains in PDB entry 7PIM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 163	GLY 497
G	SER 40	ALA 57
A	VAL 163	GLY 497
C	SER 40	ALA 57
D	VAL 163	GLY 497
E	SER 40	ALA 57
F	VAL 163	GLY 497
H	SER 40	ALA 57

There are 64 helices in PDB entry 7PIM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	169	181	Right-handed alpha
Helix 2	AA2	B	196	213	Right-handed alpha
Helix 3	AA3	B	225	243	Right-handed alpha
Helix 4	AA4	B	248	262	Right-handed alpha
Helix 5	AA5	B	272	284	Right-handed alpha
Helix 6	AA6	B	295	305	Right-handed alpha
Helix 7	AA7	B	327	335	Right-handed alpha
Helix 8	AA8	B	335	340	Right-handed alpha
Helix 9	AA9	B	341	356	Right-handed alpha
Helix 10	AB1	B	359	374	Right-handed alpha
Helix 11	AB2	B	389	395	Right-handed alpha
Helix 12	AB3	B	395	404	Right-handed alpha
Helix 13	AB4	B	413	420	Right-handed alpha
Helix 14	AB5	B	436	451	Right-handed alpha
Helix 15	AB6	B	471	496	Right-handed alpha
Helix 16	AB7	G	41	57	Right-handed alpha
Helix 17	AB8	A	169	181	Right-handed alpha
Helix 18	AB9	A	196	213	Right-handed alpha
Helix 19	AC1	A	225	243	Right-handed alpha
Helix 20	AC2	A	248	262	Right-handed alpha
Helix 21	AC3	A	272	284	Right-handed alpha
Helix 22	AC4	A	295	305	Right-handed alpha
Helix 23	AC5	A	327	335	Right-handed alpha
Helix 24	AC6	A	335	340	Right-handed alpha
Helix 25	AC7	A	341	356	Right-handed alpha
Helix 26	AC8	A	359	374	Right-handed alpha
Helix 27	AC9	A	389	395	Right-handed alpha
Helix 28	AD1	A	395	404	Right-handed alpha
Helix 29	AD2	A	413	420	Right-handed alpha
Helix 30	AD3	A	436	451	Right-handed alpha
Helix 31	AD4	A	471	496	Right-handed alpha
Helix 32	AD5	C	41	57	Right-handed alpha
Helix 33	AD6	D	169	181	Right-handed alpha
Helix 34	AD7	D	196	213	Right-handed alpha
Helix 35	AD8	D	225	243	Right-handed alpha
Helix 36	AD9	D	248	262	Right-handed alpha
Helix 37	AE1	D	272	284	Right-handed alpha
Helix 38	AE2	D	295	305	Right-handed alpha
Helix 39	AE3	D	327	335	Right-handed alpha
Helix 40	AE4	D	335	340	Right-handed alpha
Helix 41	AE5	D	341	356	Right-handed alpha
Helix 42	AE6	D	359	374	Right-handed alpha
Helix 43	AE7	D	389	395	Right-handed alpha
Helix 44	AE8	D	395	404	Right-handed alpha
Helix 45	AE9	D	413	420	Right-handed alpha
Helix 46	AF1	D	436	451	Right-handed alpha
Helix 47	AF2	D	471	496	Right-handed alpha
Helix 48	AF3	E	41	57	Right-handed alpha
Helix 49	AF4	F	169	181	Right-handed alpha
Helix 50	AF5	F	196	213	Right-handed alpha
Helix 51	AF6	F	225	243	Right-handed alpha
Helix 52	AF7	F	248	262	Right-handed alpha
Helix 53	AF8	F	272	284	Right-handed alpha
Helix 54	AF9	F	295	305	Right-handed alpha
Helix 55	AG1	F	327	335	Right-handed alpha
Helix 56	AG2	F	335	340	Right-handed alpha
Helix 57	AG3	F	341	356	Right-handed alpha
Helix 58	AG4	F	359	374	Right-handed alpha
Helix 59	AG5	F	389	395	Right-handed alpha
Helix 60	AG6	F	395	404	Right-handed alpha
Helix 61	AG7	F	413	420	Right-handed alpha
Helix 62	AG8	F	436	451	Right-handed alpha
Helix 63	AG9	F	471	496	Right-handed alpha
Helix 64	AH1	H	41	57	Right-handed alpha

There are 12 sheets in PDB entry 7PIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	289	first strand
Strand 2	B	307	310	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	387	first strand
Strand 2	B	378	381	anti-parallel
Strand 3	B	430	434	parallel
Strand 4	B	408	411	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	460	first strand
Strand 2	B	465	469	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	289	first strand
Strand 2	A	307	310	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	387	first strand
Strand 2	A	378	381	anti-parallel
Strand 3	A	430	434	parallel
Strand 4	A	408	411	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	460	first strand
Strand 2	A	465	469	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	289	first strand
Strand 2	D	307	310	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	387	first strand
Strand 2	D	378	381	anti-parallel
Strand 3	D	430	434	parallel
Strand 4	D	408	411	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	456	460	first strand
Strand 2	D	465	469	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	286	289	first strand
Strand 2	F	307	310	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	384	387	first strand
Strand 2	F	378	381	anti-parallel
Strand 3	F	430	434	parallel
Strand 4	F	408	411	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	456	460	first strand
Strand 2	F	465	469	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PIM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PIM