Analysis of interatomic Contacts of Structural Units in PDB entry:
7PJC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PJC entry

There are 2 chains in PDB entry 7PJC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 5	THR 560
A	SER 5	THR 560

There are 46 helices in PDB entry 7PJC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	28	32	Right-handed alpha
Helix 2	AA2	B	35	48	Right-handed alpha
Helix 3	AA3	B	66	81	Right-handed alpha
Helix 4	AA4	B	95	107	Right-handed alpha
Helix 5	AA5	B	140	154	Right-handed alpha
Helix 6	AA6	B	186	197	Right-handed alpha
Helix 7	AA7	B	198	214	Right-handed alpha
Helix 8	AA8	B	225	235	Right-handed alpha
Helix 9	AA9	B	241	243	Right-handed 310
Helix 10	AB1	B	253	257	Right-handed 310
Helix 11	AB2	B	266	277	Right-handed alpha
Helix 12	AB3	B	301	312	Right-handed alpha
Helix 13	AB4	B	313	315	Right-handed 310
Helix 14	AB5	B	316	323	Right-handed alpha
Helix 15	AB6	B	335	344	Right-handed alpha
Helix 16	AB7	B	354	364	Right-handed alpha
Helix 17	AB8	B	386	405	Right-handed alpha
Helix 18	AB9	B	411	424	Right-handed alpha
Helix 19	AC1	B	437	455	Right-handed alpha
Helix 20	AC2	B	522	526	Right-handed 310
Helix 21	AC3	B	529	534	Right-handed alpha
Helix 22	AC4	B	534	545	Right-handed alpha
Helix 23	AC5	B	546	552	Right-handed alpha
Helix 24	AC6	A	28	33	Right-handed alpha
Helix 25	AC7	A	35	48	Right-handed alpha
Helix 26	AC8	A	66	81	Right-handed alpha
Helix 27	AC9	A	95	106	Right-handed alpha
Helix 28	AD1	A	140	154	Right-handed alpha
Helix 29	AD2	A	186	197	Right-handed alpha
Helix 30	AD3	A	198	214	Right-handed alpha
Helix 31	AD4	A	225	235	Right-handed alpha
Helix 32	AD5	A	241	243	Right-handed 310
Helix 33	AD6	A	253	257	Right-handed 310
Helix 34	AD7	A	266	276	Right-handed alpha
Helix 35	AD8	A	301	312	Right-handed alpha
Helix 36	AD9	A	313	315	Right-handed 310
Helix 37	AE1	A	316	323	Right-handed alpha
Helix 38	AE2	A	335	344	Right-handed alpha
Helix 39	AE3	A	354	364	Right-handed alpha
Helix 40	AE4	A	386	405	Right-handed alpha
Helix 41	AE5	A	411	424	Right-handed alpha
Helix 42	AE6	A	437	455	Right-handed alpha
Helix 43	AE7	A	522	526	Right-handed 310
Helix 44	AE8	A	529	534	Right-handed alpha
Helix 45	AE9	A	534	545	Right-handed alpha
Helix 46	AF1	A	546	552	Right-handed alpha

There are 14 sheets in PDB entry 7PJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	10	first strand
Strand 2	B	156	160	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	27	first strand
Strand 2	B	126	132	anti-parallel
Strand 3	B	110	114	anti-parallel
Strand 4	B	56	62	parallel
Strand 5	B	93	94	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	27	first strand
Strand 2	B	126	132	anti-parallel
Strand 3	B	110	114	anti-parallel
Strand 4	B	56	62	parallel
Strand 5	B	85	89	parallel
Strand 6	B	178	183	parallel
Strand 7	B	171	175	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	217	220	parallel
Strand 3	B	280	284	parallel
Strand 4	B	291	295	anti-parallel
Strand 5	B	298	299	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	351	first strand
Strand 2	B	327	330	parallel
Strand 3	B	369	372	parallel
Strand 4	B	376	379	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	462	first strand
Strand 2	B	465	472	anti-parallel
Strand 3	B	488	492	anti-parallel
Strand 4	B	496	503	anti-parallel
Strand 5	B	510	520	anti-parallel
Strand 6	B	425	436	anti-parallel
Strand 7	B	558	560	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	476	first strand
Strand 2	B	482	483	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	A	159	160	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	27	first strand
Strand 2	A	126	133	anti-parallel
Strand 3	A	110	114	anti-parallel
Strand 4	A	56	62	parallel
Strand 5	A	93	94	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	27	first strand
Strand 2	A	126	133	anti-parallel
Strand 3	A	110	114	anti-parallel
Strand 4	A	56	62	parallel
Strand 5	A	85	89	parallel
Strand 6	A	178	183	parallel
Strand 7	A	171	175	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	217	220	parallel
Strand 3	A	280	284	parallel
Strand 4	A	291	295	anti-parallel
Strand 5	A	298	299	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	351	first strand
Strand 2	A	327	330	parallel
Strand 3	A	369	372	parallel
Strand 4	A	376	379	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	462	first strand
Strand 2	A	465	472	anti-parallel
Strand 3	A	488	492	anti-parallel
Strand 4	A	496	503	anti-parallel
Strand 5	A	510	520	anti-parallel
Strand 6	A	425	436	anti-parallel
Strand 7	A	558	560	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	476	first strand
Strand 2	A	482	483	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PJC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PJC