Analysis of interatomic Contacts of Structural Units in PDB entry:
7PJE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PJE entry

There are 2 chains in PDB entry 7PJE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	GLY 436
B	MET 1	ASN 228

There are 96 helices in PDB entry 7PJE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	29	Right-handed alpha
Helix 2	AA2	A	48	51	Right-handed 310
Helix 3	AA3	A	72	81	Right-handed alpha
Helix 4	AA4	A	88	90	Right-handed 310
Helix 5	AA5	A	102	108	Right-handed alpha
Helix 6	AA6	A	110	113	Right-handed 310
Helix 7	AA7	A	114	127	Right-handed alpha
Helix 8	AA8	A	144	161	Right-handed alpha
Helix 9	AA9	A	174	178	Right-handed 310
Helix 10	AB1	A	182	198	Right-handed alpha
Helix 11	AB2	A	206	216	Right-handed alpha
Helix 12	AB3	A	223	244	Right-handed alpha
Helix 13	AB4	A	251	260	Right-handed alpha
Helix 14	AB5	A	287	295	Right-handed alpha
Helix 15	AB6	A	296	301	Right-handed 310
Helix 16	AB7	A	324	339	Right-handed alpha
Helix 17	AB8	A	384	400	Right-handed alpha
Helix 18	AB9	A	404	410	Right-handed alpha
Helix 19	AC1	A	415	436	Right-handed alpha
Helix 20	AC2	B	10	29	Right-handed alpha
Helix 21	AC3	B	41	48	Right-handed alpha
Helix 22	AC4	B	49	51	Right-handed 310
Helix 23	AC5	B	72	81	Right-handed alpha
Helix 24	AC6	B	88	90	Right-handed 310
Helix 25	AC7	B	102	109	Right-handed alpha
Helix 26	AC8	B	109	128	Right-handed alpha
Helix 27	AC9	B	144	161	Right-handed alpha
Helix 28	AD1	B	182	198	Right-handed alpha
Helix 29	AD2	B	206	216	Right-handed alpha
Helix 30	AD3	B	223	244	Right-handed alpha
Helix 31	AD4	B	251	260	Right-handed alpha
Helix 32	AD5	B	287	295	Right-handed alpha
Helix 33	AD6	B	296	301	Right-handed 310
Helix 34	AD7	B	306	310	Right-handed 310
Helix 35	AD8	B	324	339	Right-handed alpha
Helix 36	AD9	B	340	343	Right-handed 310
Helix 37	AE1	B	384	401	Right-handed alpha
Helix 38	AE2	B	405	410	Right-handed alpha
Helix 39	AE3	B	415	438	Right-handed alpha
Helix 40	AE4	F	14	25	Right-handed alpha
Helix 41	AE5	F	26	36	Right-handed alpha
Helix 42	AE6	F	49	58	Right-handed alpha
Helix 43	AE7	F	59	69	Right-handed alpha
Helix 44	AE8	F	82	91	Right-handed alpha
Helix 45	AE9	F	92	102	Right-handed alpha
Helix 46	AF1	F	115	123	Right-handed alpha
Helix 47	AF2	F	125	135	Right-handed alpha
Helix 48	AF3	C	10	29	Right-handed alpha
Helix 49	AF4	C	46	51	Right-handed 310
Helix 50	AF5	C	72	79	Right-handed alpha
Helix 51	AF6	C	88	90	Right-handed 310
Helix 52	AF7	C	102	108	Right-handed alpha
Helix 53	AF8	C	110	113	Right-handed 310
Helix 54	AF9	C	114	128	Right-handed alpha
Helix 55	AG1	C	144	161	Right-handed alpha
Helix 56	AG2	C	174	178	Right-handed 310
Helix 57	AG3	C	182	198	Right-handed alpha
Helix 58	AG4	C	206	216	Right-handed alpha
Helix 59	AG5	C	223	244	Right-handed alpha
Helix 60	AG6	C	251	260	Right-handed alpha
Helix 61	AG7	C	287	295	Right-handed alpha
Helix 62	AG8	C	296	301	Right-handed 310
Helix 63	AG9	C	306	310	Right-handed 310
Helix 64	AH1	C	324	338	Right-handed alpha
Helix 65	AH2	C	384	401	Right-handed alpha
Helix 66	AH3	C	404	410	Right-handed alpha
Helix 67	AH4	C	415	436	Right-handed alpha
Helix 68	AH5	D	10	29	Right-handed alpha
Helix 69	AH6	D	41	48	Right-handed alpha
Helix 70	AH7	D	49	51	Right-handed 310
Helix 71	AH8	D	72	80	Right-handed alpha
Helix 72	AH9	D	88	90	Right-handed 310
Helix 73	AI1	D	102	109	Right-handed alpha
Helix 74	AI2	D	109	127	Right-handed alpha
Helix 75	AI3	D	144	161	Right-handed alpha
Helix 76	AI4	D	182	198	Right-handed alpha
Helix 77	AI5	D	206	215	Right-handed alpha
Helix 78	AI6	D	223	239	Right-handed alpha
Helix 79	AI7	D	239	244	Right-handed alpha
Helix 80	AI8	D	251	260	Right-handed alpha
Helix 81	AI9	D	287	295	Right-handed alpha
Helix 82	AJ1	D	297	301	Right-handed 310
Helix 83	AJ2	D	306	310	Right-handed 310
Helix 84	AJ3	D	324	339	Right-handed alpha
Helix 85	AJ4	D	340	343	Right-handed 310
Helix 86	AJ5	D	384	401	Right-handed alpha
Helix 87	AJ6	D	404	410	Right-handed alpha
Helix 88	AJ7	D	415	438	Right-handed alpha
Helix 89	AJ8	E	14	25	Right-handed alpha
Helix 90	AJ9	E	26	36	Right-handed alpha
Helix 91	AK1	E	49	58	Right-handed alpha
Helix 92	AK2	E	59	69	Right-handed alpha
Helix 93	AK3	E	82	91	Right-handed alpha
Helix 94	AK4	E	92	102	Right-handed alpha
Helix 95	AK5	E	115	124	Right-handed alpha
Helix 96	AK6	E	125	135	Right-handed alpha

There are 8 sheets in PDB entry 7PJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	4	9	parallel
Strand 4	A	134	140	parallel
Strand 5	A	165	172	parallel
Strand 6	A	200	205	parallel
Strand 7	A	267	273	parallel
Strand 8	A	373	381	anti-parallel
Strand 9	A	312	321	anti-parallel
Strand 10	A	351	356	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	65	69	parallel
Strand 3	B	3	9	parallel
Strand 4	B	132	140	parallel
Strand 5	B	165	172	parallel
Strand 6	B	200	205	parallel
Strand 7	B	267	273	parallel
Strand 8	B	373	381	anti-parallel
Strand 9	B	312	321	anti-parallel
Strand 10	B	351	356	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	61	63	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	65	69	parallel
Strand 3	C	4	9	parallel
Strand 4	C	134	140	parallel
Strand 5	C	165	172	parallel
Strand 6	C	200	205	parallel
Strand 7	C	267	273	parallel
Strand 8	C	373	381	anti-parallel
Strand 9	C	312	321	anti-parallel
Strand 10	C	351	356	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	61	63	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	65	69	parallel
Strand 3	D	3	9	parallel
Strand 4	D	132	140	parallel
Strand 5	D	165	172	parallel
Strand 6	D	200	205	parallel
Strand 7	D	267	273	parallel
Strand 8	D	373	381	anti-parallel
Strand 9	D	312	321	anti-parallel
Strand 10	D	351	356	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	60	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PJE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PJE