Analysis of interatomic Contacts of Structural Units in PDB entry:
7PJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PJR entry

There is 1 chain in PDB entry 7PJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 10GLY 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7PJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 66Right-handed alpha
Helix 2
AA2
A
67 70Right-handed 310
Helix 3
AA3
A
82 86Right-handed 310
Helix 4
AA4
A
126 140Right-handed alpha
Helix 5
AA5
A
141 146Right-handed 310
Helix 6
AA6
A
155 176Right-handed alpha
Helix 7
AA7
A
209 222Right-handed alpha
Helix 8
AA8
A
226 234Right-handed alpha
Helix 9
AA9
A
237 242Right-handed 310
Helix 10
AB1
A
243 248Right-handed alpha
Helix 11
AB2
A
249 251Right-handed 310
Helix 12
AB3
A
264 270Right-handed alpha
Helix 13
AB4
A
280 298Right-handed alpha
Helix 14
AB5
A
330 341Right-handed alpha
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There are 3 sheets in PDB entry 7PJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
12 16anti-parallel
Strand 3
A
31 35anti-parallel
Strand 4
A
99 103anti-parallel
Strand 5
A
42 47parallel
Strand 6
A
148 154parallel
Strand 7
A
181 187parallel
Strand 8
A
255 258parallel
Strand 9
A
304 306parallel
Strand 10
A
358 360parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
310 311parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
A
328 329anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il