Analysis of interatomic Contacts of Structural Units in PDB entry:
7PK2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PK2 entry

There are 2 chains in PDB entry 7PK2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LEU 295
B
 GLY 0LEU 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7PK2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 19Right-handed alpha
Helix 2
AA2
A
24 35Right-handed alpha
Helix 3
AA3
A
61 64Right-handed 310
Helix 4
AA4
A
81 90Right-handed alpha
Helix 5
AA5
A
109 122Right-handed alpha
Helix 6
AA6
A
136 143Right-handed alpha
Helix 7
AA7
A
173 175Right-handed 310
Helix 8
AA8
A
176 184Right-handed alpha
Helix 9
AA9
A
189 203Right-handed alpha
Helix 10
AB1
A
234 237Right-handed 310
Helix 11
AB2
A
240 256Right-handed alpha
Helix 12
AB3
A
268 278Right-handed alpha
Helix 13
AB4
B
6 19Right-handed alpha
Helix 14
AB5
B
24 35Right-handed alpha
Helix 15
AB6
B
61 64Right-handed 310
Helix 16
AB7
B
81 90Right-handed alpha
Helix 17
AB8
B
109 122Right-handed alpha
Helix 18
AB9
B
136 143Right-handed alpha
Helix 19
AC1
B
173 175Right-handed 310
Helix 20
AC2
B
176 183Right-handed alpha
Helix 21
AC3
B
189 203Right-handed alpha
Helix 22
AC4
B
234 237Right-handed 310
Helix 23
AC5
B
240 256Right-handed alpha
Helix 24
AC6
B
268 278Right-handed alpha
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There are 4 sheets in PDB entry 7PK2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
42 46anti-parallel
Strand 3
A
54 59anti-parallel
Strand 4
A
74 79anti-parallel
Strand 5
A
101 105parallel
Strand 6
A
280 294anti-parallel
Strand 7
A
123 135anti-parallel
Strand 8
A
261 264anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
206 209anti-parallel
Strand 3
A
215 221anti-parallel
Strand 4
A
227 232anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
42 46anti-parallel
Strand 3
B
54 59anti-parallel
Strand 4
B
74 79anti-parallel
Strand 5
B
101 105parallel
Strand 6
B
280 294anti-parallel
Strand 7
B
123 135anti-parallel
Strand 8
B
261 264anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 170first strand
Strand 2
B
206 209anti-parallel
Strand 3
B
215 221anti-parallel
Strand 4
B
227 232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il