Analysis of interatomic Contacts of Structural Units in PDB entry:
7PL0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PL0 entry

There are 4 chains in PDB entry 7PL0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 56	LEU 414
B	GLU 56	LEU 414
C	GLU 56	LEU 414
D	GLU 56	PRO 315

There are 52 helices in PDB entry 7PL0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	108	Right-handed alpha
Helix 2	AA2	A	145	147	Right-handed 310
Helix 3	AA3	A	156	162	Right-handed 310
Helix 4	AA4	A	178	182	Right-handed 310
Helix 5	AA5	A	194	209	Right-handed alpha
Helix 6	AA6	A	249	257	Right-handed alpha
Helix 7	AA7	A	264	268	Right-handed 310
Helix 8	AA8	A	281	287	Right-handed alpha
Helix 9	AA9	A	289	298	Right-handed alpha
Helix 10	AB1	A	325	332	Right-handed alpha
Helix 11	AB2	A	367	372	Right-handed alpha
Helix 12	AB3	A	372	383	Right-handed alpha
Helix 13	AB4	A	384	387	Right-handed 310
Helix 14	AB5	B	88	109	Right-handed alpha
Helix 15	AB6	B	145	148	Right-handed 310
Helix 16	AB7	B	158	162	Right-handed 310
Helix 17	AB8	B	178	182	Right-handed 310
Helix 18	AB9	B	194	209	Right-handed alpha
Helix 19	AC1	B	249	257	Right-handed alpha
Helix 20	AC2	B	264	268	Right-handed 310
Helix 21	AC3	B	281	287	Right-handed alpha
Helix 22	AC4	B	289	298	Right-handed alpha
Helix 23	AC5	B	325	332	Right-handed alpha
Helix 24	AC6	B	367	372	Right-handed alpha
Helix 25	AC7	B	372	383	Right-handed alpha
Helix 26	AC8	B	384	387	Right-handed 310
Helix 27	AC9	C	88	109	Right-handed alpha
Helix 28	AD1	C	145	148	Right-handed 310
Helix 29	AD2	C	158	162	Right-handed 310
Helix 30	AD3	C	178	182	Right-handed 310
Helix 31	AD4	C	194	209	Right-handed alpha
Helix 32	AD5	C	249	257	Right-handed alpha
Helix 33	AD6	C	264	268	Right-handed 310
Helix 34	AD7	C	281	287	Right-handed alpha
Helix 35	AD8	C	289	298	Right-handed alpha
Helix 36	AD9	C	325	332	Right-handed alpha
Helix 37	AE1	C	367	372	Right-handed alpha
Helix 38	AE2	C	372	383	Right-handed alpha
Helix 39	AE3	C	384	387	Right-handed 310
Helix 40	AE4	D	88	108	Right-handed alpha
Helix 41	AE5	D	145	148	Right-handed 310
Helix 42	AE6	D	158	162	Right-handed 310
Helix 43	AE7	D	178	182	Right-handed 310
Helix 44	AE8	D	194	209	Right-handed alpha
Helix 45	AE9	D	249	257	Right-handed alpha
Helix 46	AF1	D	264	268	Right-handed 310
Helix 47	AF2	D	281	287	Right-handed alpha
Helix 48	AF3	D	289	298	Right-handed alpha
Helix 49	AF4	D	325	332	Right-handed alpha
Helix 50	AF5	D	367	372	Right-handed alpha
Helix 51	AF6	D	372	383	Right-handed alpha
Helix 52	AF7	D	384	387	Right-handed 310

There are 13 sheets in PDB entry 7PL0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	143	first strand
Strand 2	A	186	192	anti-parallel
Strand 3	A	76	84	anti-parallel
Strand 4	A	213	222	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	153	154	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	355	365	anti-parallel
Strand 3	A	342	348	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	355	365	anti-parallel
Strand 3	A	271	280	anti-parallel
Strand 4	A	389	399	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	143	first strand
Strand 2	B	186	192	anti-parallel
Strand 3	B	76	84	anti-parallel
Strand 4	B	213	222	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	355	365	anti-parallel
Strand 3	B	342	348	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	355	365	anti-parallel
Strand 3	B	271	280	anti-parallel
Strand 4	B	389	399	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	143	first strand
Strand 2	C	186	192	anti-parallel
Strand 3	C	76	84	anti-parallel
Strand 4	C	213	222	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	355	365	anti-parallel
Strand 3	C	342	348	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	355	365	anti-parallel
Strand 3	C	271	280	anti-parallel
Strand 4	C	389	399	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	143	first strand
Strand 2	D	186	192	anti-parallel
Strand 3	D	76	84	anti-parallel
Strand 4	D	213	222	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	355	365	anti-parallel
Strand 3	D	342	348	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	355	365	anti-parallel
Strand 3	D	271	280	anti-parallel
Strand 4	D	389	399	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PL0

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PL0