Analysis of interatomic Contacts of Structural Units in PDB entry:
7PLA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PLA entry

There are 4 chains in PDB entry 7PLA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 0THR 636
B
 U 5 A 239
C
 G 24 A 40
D
 T 11 G 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7PLA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 42Right-handed alpha
Helix 2
AA2
A
58 69Right-handed alpha
Helix 3
AA3
A
77 92Right-handed alpha
Helix 4
AA4
A
321 339Right-handed alpha
Helix 5
AA5
A
343 347Right-handed 310
Helix 6
AA6
A
380 382Right-handed 310
Helix 7
AA7
A
383 407Right-handed alpha
Helix 8
AA8
A
413 430Right-handed alpha
Helix 9
AA9
A
476 481Right-handed alpha
Helix 10
AB1
A
485 506Right-handed alpha
Helix 11
AB2
A
518 538Right-handed alpha
Helix 12
AB3
A
548 551Right-handed 310
Helix 13
AB4
A
552 567Right-handed alpha
Helix 14
AB5
A
570 585Right-handed alpha
Helix 15
AB6
A
591 605Right-handed alpha
Helix 16
AB7
A
618 636Right-handed alpha
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There are 2 sheets in PDB entry 7PLA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
349 357anti-parallel
Strand 3
A
370 378anti-parallel
Strand 4
A
3 11anti-parallel
Strand 5
A
312 316anti-parallel
Strand 6
A
301 305anti-parallel
Strand 7
A
291 295anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 475first strand
Strand 2
A
459 465anti-parallel
Strand 3
A
444 453anti-parallel
Strand 4
A
540 546parallel
Strand 5
A
607 611parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il