Analysis of interatomic Contacts of Structural Units in PDB entry:
7PLD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PLD entry

There are 2 chains in PDB entry 7PLD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4VAL 290
B
 ALA 2VAL 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 7PLD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 96Right-handed 310
Helix 2
AA2
A
259 266Right-handed alpha
Helix 3
AA3
B
93 96Right-handed 310
Helix 4
AA4
B
259 266Right-handed alpha
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There are 12 sheets in PDB entry 7PLD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
272 276anti-parallel
Strand 3
A
248 254anti-parallel
Strand 4
A
235 242anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 23first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
36 40anti-parallel
Strand 4
A
47 51anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
68 72anti-parallel
Strand 3
A
75 80anti-parallel
Strand 4
A
84 89anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 105first strand
Strand 2
A
111 117anti-parallel
Strand 3
A
125 131anti-parallel
Strand 4
A
134 142anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 150first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
166 172anti-parallel
Strand 4
A
178 186anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 200first strand
Strand 2
A
206 211anti-parallel
Strand 3
A
215 219anti-parallel
Strand 4
A
225 230anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 10first strand
Strand 2
B
272 276anti-parallel
Strand 3
B
248 253anti-parallel
Strand 4
B
236 242anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 23first strand
Strand 2
B
26 31anti-parallel
Strand 3
B
36 40anti-parallel
Strand 4
B
47 51anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 61first strand
Strand 2
B
68 72anti-parallel
Strand 3
B
75 80anti-parallel
Strand 4
B
84 89anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 105first strand
Strand 2
B
111 117anti-parallel
Strand 3
B
125 131anti-parallel
Strand 4
B
134 142anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 150first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
166 172anti-parallel
Strand 4
B
178 186anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 200first strand
Strand 2
B
206 211anti-parallel
Strand 3
B
215 219anti-parallel
Strand 4
B
225 230anti-parallel
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