Analysis of interatomic Contacts of Structural Units in PDB entry:
7PLI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PLI entry

There are 5 chains in PDB entry 7PLI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 457
D	G 1	U 22
B	MET 1	LYS 457
C	G 1	U 22
E	MET 1	ARG 280

There are137 helices in PDB entry 7PLI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	8	Right-handed 310
Helix 2	AA2	A	11	22	Right-handed alpha
Helix 3	AA3	A	27	39	Right-handed alpha
Helix 4	AA4	A	52	63	Right-handed alpha
Helix 5	AA5	A	80	95	Right-handed alpha
Helix 6	AA6	A	96	98	Right-handed 310
Helix 7	AA7	A	111	119	Right-handed alpha
Helix 8	AA8	A	129	139	Right-handed alpha
Helix 9	AA9	A	154	159	Right-handed alpha
Helix 10	AB1	A	163	172	Right-handed alpha
Helix 11	AB2	A	188	195	Right-handed alpha
Helix 12	AB3	A	196	199	Right-handed 310
Helix 13	AB4	A	227	240	Right-handed alpha
Helix 14	AB5	A	250	264	Right-handed alpha
Helix 15	AB6	A	276	289	Right-handed alpha
Helix 16	AB7	A	299	302	Right-handed 310
Helix 17	AB8	A	321	330	Right-handed alpha
Helix 18	AB9	A	346	348	Right-handed 310
Helix 19	AC1	A	349	361	Right-handed alpha
Helix 20	AC2	A	396	406	Right-handed alpha
Helix 21	AC3	A	411	413	Right-handed 310
Helix 22	AC4	A	431	443	Right-handed alpha
Helix 23	AC5	B	2	8	Right-handed 310
Helix 24	AC6	B	11	22	Right-handed alpha
Helix 25	AC7	B	27	39	Right-handed alpha
Helix 26	AC8	B	52	64	Right-handed alpha
Helix 27	AC9	B	80	95	Right-handed alpha
Helix 28	AD1	B	96	98	Right-handed 310
Helix 29	AD2	B	111	119	Right-handed alpha
Helix 30	AD3	B	129	139	Right-handed alpha
Helix 31	AD4	B	154	159	Right-handed alpha
Helix 32	AD5	B	163	172	Right-handed alpha
Helix 33	AD6	B	188	195	Right-handed alpha
Helix 34	AD7	B	196	199	Right-handed 310
Helix 35	AD8	B	227	240	Right-handed alpha
Helix 36	AD9	B	250	264	Right-handed alpha
Helix 37	AE1	B	276	289	Right-handed alpha
Helix 38	AE2	B	299	302	Right-handed 310
Helix 39	AE3	B	321	330	Right-handed alpha
Helix 40	AE4	B	346	348	Right-handed 310
Helix 41	AE5	B	349	361	Right-handed alpha
Helix 42	AE6	B	390	394	Right-handed 310
Helix 43	AE7	B	396	406	Right-handed alpha
Helix 44	AE8	B	411	413	Right-handed 310
Helix 45	AE9	B	431	443	Right-handed alpha
Helix 46	AF1	E	3	8	Right-handed 310
Helix 47	AF2	E	11	22	Right-handed alpha
Helix 48	AF3	E	27	39	Right-handed alpha
Helix 49	AF4	E	52	64	Right-handed alpha
Helix 50	AF5	E	80	95	Right-handed alpha
Helix 51	AF6	E	96	98	Right-handed 310
Helix 52	AF7	E	111	119	Right-handed alpha
Helix 53	AF8	E	129	139	Right-handed alpha
Helix 54	AF9	E	154	159	Right-handed alpha
Helix 55	AG1	E	160	174	Right-handed alpha
Helix 56	AG2	E	188	194	Right-handed alpha
Helix 57	AG3	E	195	199	Right-handed 310
Helix 58	AG4	E	227	240	Right-handed alpha
Helix 59	AG5	E	250	264	Right-handed alpha
Helix 60	AG6	E	276	289	Right-handed alpha
Helix 61	AG7	E	299	302	Right-handed 310
Helix 62	AG8	E	321	330	Right-handed alpha
Helix 63	AG9	E	346	348	Right-handed 310
Helix 64	AH1	E	349	361	Right-handed alpha
Helix 65	AH2	E	390	394	Right-handed 310
Helix 66	AH3	E	396	406	Right-handed alpha
Helix 67	AH4	E	411	413	Right-handed 310
Helix 68	AH5	E	431	443	Right-handed alpha
Helix 69	AH6	J	3	8	Right-handed 310
Helix 70	AH7	J	11	22	Right-handed alpha
Helix 71	AH8	J	27	39	Right-handed alpha
Helix 72	AH9	J	52	64	Right-handed alpha
Helix 73	AI1	J	80	95	Right-handed alpha
Helix 74	AI2	J	96	98	Right-handed 310
Helix 75	AI3	J	111	119	Right-handed alpha
Helix 76	AI4	J	129	139	Right-handed alpha
Helix 77	AI5	J	154	159	Right-handed alpha
Helix 78	AI6	J	160	174	Right-handed alpha
Helix 79	AI7	J	188	195	Right-handed alpha
Helix 80	AI8	J	196	199	Right-handed 310
Helix 81	AI9	J	227	240	Right-handed alpha
Helix 82	AJ1	J	250	264	Right-handed alpha
Helix 83	AJ2	J	276	289	Right-handed alpha
Helix 84	AJ3	J	299	302	Right-handed 310
Helix 85	AJ4	J	321	330	Right-handed alpha
Helix 86	AJ5	J	346	348	Right-handed 310
Helix 87	AJ6	J	349	361	Right-handed alpha
Helix 88	AJ7	J	390	394	Right-handed 310
Helix 89	AJ8	J	396	406	Right-handed alpha
Helix 90	AJ9	J	411	413	Right-handed 310
Helix 91	AK1	J	433	443	Right-handed alpha
Helix 92	AK2	I	3	8	Right-handed 310
Helix 93	AK3	I	11	22	Right-handed alpha
Helix 94	AK4	I	27	39	Right-handed alpha
Helix 95	AK5	I	52	64	Right-handed alpha
Helix 96	AK6	I	80	95	Right-handed alpha
Helix 97	AK7	I	96	98	Right-handed 310
Helix 98	AK8	I	111	119	Right-handed alpha
Helix 99	AK9	I	129	139	Right-handed alpha
Helix 100	AL1	I	154	159	Right-handed alpha
Helix 101	AL2	I	160	173	Right-handed alpha
Helix 102	AL3	I	188	195	Right-handed alpha
Helix 103	AL4	I	196	199	Right-handed 310
Helix 104	AL5	I	227	240	Right-handed alpha
Helix 105	AL6	I	250	264	Right-handed alpha
Helix 106	AL7	I	276	289	Right-handed alpha
Helix 107	AL8	I	299	302	Right-handed 310
Helix 108	AL9	I	321	330	Right-handed alpha
Helix 109	AM1	I	346	348	Right-handed 310
Helix 110	AM2	I	349	361	Right-handed alpha
Helix 111	AM3	I	390	394	Right-handed 310
Helix 112	AM4	I	396	406	Right-handed alpha
Helix 113	AM5	I	411	413	Right-handed 310
Helix 114	AM6	I	431	443	Right-handed alpha
Helix 115	AM7	F	2	8	Right-handed 310
Helix 116	AM8	F	11	21	Right-handed alpha
Helix 117	AM9	F	27	39	Right-handed alpha
Helix 118	AN1	F	52	64	Right-handed alpha
Helix 119	AN2	F	80	95	Right-handed alpha
Helix 120	AN3	F	96	98	Right-handed 310
Helix 121	AN4	F	111	120	Right-handed alpha
Helix 122	AN5	F	129	139	Right-handed alpha
Helix 123	AN6	F	154	159	Right-handed alpha
Helix 124	AN7	F	160	174	Right-handed alpha
Helix 125	AN8	F	188	194	Right-handed alpha
Helix 126	AN9	F	195	199	Right-handed 310
Helix 127	AO1	F	227	240	Right-handed alpha
Helix 128	AO2	F	250	264	Right-handed alpha
Helix 129	AO3	F	276	289	Right-handed alpha
Helix 130	AO4	F	299	302	Right-handed 310
Helix 131	AO5	F	321	330	Right-handed alpha
Helix 132	AO6	F	346	348	Right-handed 310
Helix 133	AO7	F	349	361	Right-handed alpha
Helix 134	AO8	F	390	394	Right-handed 310
Helix 135	AO9	F	396	406	Right-handed alpha
Helix 136	AP1	F	411	413	Right-handed 310
Helix 137	AP2	F	433	443	Right-handed alpha

There are 24 sheets in PDB entry 7PLI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	125	128	parallel
Strand 3	A	74	77	parallel
Strand 4	A	149	153	parallel
Strand 5	A	179	184	parallel
Strand 6	A	42	46	parallel
Strand 7	A	202	206	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	222	first strand
Strand 2	A	339	345	parallel
Strand 3	A	312	315	parallel
Strand 4	A	244	247	parallel
Strand 5	A	294	297	parallel
Strand 6	A	268	271	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	420	first strand
Strand 2	A	424	430	anti-parallel
Strand 3	A	382	388	anti-parallel
Strand 4	A	453	455	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	A	449	450	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	125	128	parallel
Strand 3	B	74	77	parallel
Strand 4	B	149	153	parallel
Strand 5	B	179	184	parallel
Strand 6	B	43	46	parallel
Strand 7	B	203	206	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	271	first strand
Strand 2	B	294	297	parallel
Strand 3	B	244	247	parallel
Strand 4	B	312	315	parallel
Strand 5	B	339	345	parallel
Strand 6	B	216	222	parallel
Strand 7	B	366	367	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	420	first strand
Strand 2	B	424	430	anti-parallel
Strand 3	B	382	388	anti-parallel
Strand 4	B	453	455	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	449	450	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	106	first strand
Strand 2	E	125	128	parallel
Strand 3	E	74	77	parallel
Strand 4	E	149	152	parallel
Strand 5	E	179	184	parallel
Strand 6	E	43	46	parallel
Strand 7	E	203	206	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	216	222	first strand
Strand 2	E	339	345	parallel
Strand 3	E	312	315	parallel
Strand 4	E	244	247	parallel
Strand 5	E	294	297	parallel
Strand 6	E	268	271	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	415	420	first strand
Strand 2	E	424	430	anti-parallel
Strand 3	E	382	388	anti-parallel
Strand 4	E	453	455	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	445	446	first strand
Strand 2	E	449	450	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	103	106	first strand
Strand 2	J	125	128	parallel
Strand 3	J	74	77	parallel
Strand 4	J	149	152	parallel
Strand 5	J	179	184	parallel
Strand 6	J	42	46	parallel
Strand 7	J	202	206	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	268	271	first strand
Strand 2	J	294	297	parallel
Strand 3	J	244	247	parallel
Strand 4	J	312	315	parallel
Strand 5	J	339	345	parallel
Strand 6	J	216	222	parallel
Strand 7	J	366	367	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	415	420	first strand
Strand 2	J	424	430	anti-parallel
Strand 3	J	382	388	anti-parallel
Strand 4	J	453	455	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	445	446	first strand
Strand 2	J	449	450	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	103	106	first strand
Strand 2	I	125	128	parallel
Strand 3	I	74	77	parallel
Strand 4	I	149	152	parallel
Strand 5	I	179	184	parallel
Strand 6	I	43	46	parallel
Strand 7	I	203	206	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	216	222	first strand
Strand 2	I	339	345	parallel
Strand 3	I	312	315	parallel
Strand 4	I	244	247	parallel
Strand 5	I	294	297	parallel
Strand 6	I	268	271	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	415	420	first strand
Strand 2	I	424	430	anti-parallel
Strand 3	I	382	388	anti-parallel
Strand 4	I	453	455	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	445	446	first strand
Strand 2	I	449	450	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	106	first strand
Strand 2	F	125	128	parallel
Strand 3	F	74	77	parallel
Strand 4	F	149	153	parallel
Strand 5	F	179	184	parallel
Strand 6	F	43	46	parallel
Strand 7	F	203	206	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	268	271	first strand
Strand 2	F	294	297	parallel
Strand 3	F	244	247	parallel
Strand 4	F	312	315	parallel
Strand 5	F	339	345	parallel
Strand 6	F	216	222	parallel
Strand 7	F	366	367	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	415	420	first strand
Strand 2	F	424	430	anti-parallel
Strand 3	F	382	388	anti-parallel
Strand 4	F	453	455	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	445	446	first strand
Strand 2	F	449	450	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PLI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PLI