Analysis of interatomic Contacts of Structural Units in PDB entry:
7PLM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PLM entry

There are 2 chains in PDB entry 7PLM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	THR 1230
B	GLY 2	THR 1230

There are104 helices in PDB entry 7PLM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	22	Right-handed alpha
Helix 2	AA2	A	33	47	Right-handed alpha
Helix 3	AA3	A	63	77	Right-handed alpha
Helix 4	AA4	A	86	103	Right-handed alpha
Helix 5	AA5	A	127	132	Right-handed alpha
Helix 6	AA6	A	145	164	Right-handed alpha
Helix 7	AA7	A	187	193	Right-handed alpha
Helix 8	AA8	A	196	206	Right-handed alpha
Helix 9	AA9	A	224	231	Right-handed alpha
Helix 10	AB1	A	232	255	Right-handed alpha
Helix 11	AB2	A	278	291	Right-handed alpha
Helix 12	AB3	A	292	294	Right-handed 310
Helix 13	AB4	A	309	317	Right-handed alpha
Helix 14	AB5	A	338	352	Right-handed alpha
Helix 15	AB6	A	371	384	Right-handed alpha
Helix 16	AB7	A	429	445	Right-handed alpha
Helix 17	AB8	A	493	498	Right-handed alpha
Helix 18	AB9	A	518	526	Right-handed alpha
Helix 19	AC1	A	527	537	Right-handed alpha
Helix 20	AC2	A	545	553	Right-handed alpha
Helix 21	AC3	A	559	571	Right-handed alpha
Helix 22	AC4	A	580	590	Right-handed alpha
Helix 23	AC5	A	599	613	Right-handed alpha
Helix 24	AC6	A	619	624	Right-handed 310
Helix 25	AC7	A	637	642	Right-handed alpha
Helix 26	AC8	A	642	648	Right-handed alpha
Helix 27	AC9	A	650	654	Right-handed 310
Helix 28	AD1	A	655	659	Right-handed 310
Helix 29	AD2	A	669	673	Right-handed 310
Helix 30	AD3	A	693	699	Right-handed alpha
Helix 31	AD4	A	749	755	Right-handed alpha
Helix 32	AD5	A	774	782	Right-handed alpha
Helix 33	AD6	A	795	801	Right-handed alpha
Helix 34	AD7	A	817	829	Right-handed alpha
Helix 35	AD8	A	839	846	Right-handed alpha
Helix 36	AD9	A	871	898	Right-handed alpha
Helix 37	AE1	A	904	916	Right-handed alpha
Helix 38	AE2	A	919	934	Right-handed alpha
Helix 39	AE3	A	939	948	Right-handed alpha
Helix 40	AE4	A	949	952	Right-handed 310
Helix 41	AE5	A	963	968	Right-handed alpha
Helix 42	AE6	A	970	978	Right-handed alpha
Helix 43	AE7	A	1024	1031	Right-handed alpha
Helix 44	AE8	A	1045	1058	Right-handed alpha
Helix 45	AE9	A	1071	1075	Right-handed 310
Helix 46	AF1	A	1079	1081	Right-handed 310
Helix 47	AF2	A	1082	1093	Right-handed alpha
Helix 48	AF3	A	1123	1130	Right-handed alpha
Helix 49	AF4	A	1131	1141	Right-handed alpha
Helix 50	AF5	A	1141	1168	Right-handed alpha
Helix 51	AF6	A	1200	1204	Right-handed 310
Helix 52	AF7	A	1219	1230	Right-handed alpha
Helix 53	AF8	B	9	22	Right-handed alpha
Helix 54	AF9	B	33	47	Right-handed alpha
Helix 55	AG1	B	63	77	Right-handed alpha
Helix 56	AG2	B	86	103	Right-handed alpha
Helix 57	AG3	B	127	132	Right-handed alpha
Helix 58	AG4	B	145	164	Right-handed alpha
Helix 59	AG5	B	187	193	Right-handed alpha
Helix 60	AG6	B	196	206	Right-handed alpha
Helix 61	AG7	B	224	231	Right-handed alpha
Helix 62	AG8	B	232	255	Right-handed alpha
Helix 63	AG9	B	278	291	Right-handed alpha
Helix 64	AH1	B	292	294	Right-handed 310
Helix 65	AH2	B	309	317	Right-handed alpha
Helix 66	AH3	B	338	352	Right-handed alpha
Helix 67	AH4	B	371	384	Right-handed alpha
Helix 68	AH5	B	429	445	Right-handed alpha
Helix 69	AH6	B	493	498	Right-handed alpha
Helix 70	AH7	B	518	526	Right-handed alpha
Helix 71	AH8	B	527	537	Right-handed alpha
Helix 72	AH9	B	545	553	Right-handed alpha
Helix 73	AI1	B	559	571	Right-handed alpha
Helix 74	AI2	B	580	590	Right-handed alpha
Helix 75	AI3	B	599	613	Right-handed alpha
Helix 76	AI4	B	619	624	Right-handed 310
Helix 77	AI5	B	637	642	Right-handed alpha
Helix 78	AI6	B	642	648	Right-handed alpha
Helix 79	AI7	B	650	654	Right-handed 310
Helix 80	AI8	B	655	659	Right-handed 310
Helix 81	AI9	B	669	673	Right-handed 310
Helix 82	AJ1	B	693	699	Right-handed alpha
Helix 83	AJ2	B	749	755	Right-handed alpha
Helix 84	AJ3	B	774	782	Right-handed alpha
Helix 85	AJ4	B	795	801	Right-handed alpha
Helix 86	AJ5	B	817	829	Right-handed alpha
Helix 87	AJ6	B	839	846	Right-handed alpha
Helix 88	AJ7	B	871	898	Right-handed alpha
Helix 89	AJ8	B	904	916	Right-handed alpha
Helix 90	AJ9	B	919	934	Right-handed alpha
Helix 91	AK1	B	939	948	Right-handed alpha
Helix 92	AK2	B	949	952	Right-handed 310
Helix 93	AK3	B	963	968	Right-handed alpha
Helix 94	AK4	B	970	978	Right-handed alpha
Helix 95	AK5	B	1024	1031	Right-handed alpha
Helix 96	AK6	B	1045	1058	Right-handed alpha
Helix 97	AK7	B	1071	1075	Right-handed 310
Helix 98	AK8	B	1079	1081	Right-handed 310
Helix 99	AK9	B	1082	1093	Right-handed alpha
Helix 100	AL1	B	1123	1130	Right-handed alpha
Helix 101	AL2	B	1131	1141	Right-handed alpha
Helix 102	AL3	B	1141	1168	Right-handed alpha
Helix 103	AL4	B	1200	1204	Right-handed 310
Helix 104	AL5	B	1219	1230	Right-handed alpha

There are 14 sheets in PDB entry 7PLM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	181	185	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	24	27	parallel
Strand 3	A	81	85	parallel
Strand 4	A	108	113	parallel
Strand 5	A	167	172	parallel
Strand 6	A	139	143	parallel
Strand 7	A	304	306	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	B	863	865	parallel
Strand 3	B	832	836	parallel
Strand 4	B	956	962	parallel
Strand 5	B	985	990	parallel
Strand 6	B	1063	1068	parallel
Strand 7	B	1036	1040	parallel
Strand 8	B	1099	1101	anti-parallel
Strand 9	B	1113	1115	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	265	first strand
Strand 2	A	297	302	anti-parallel
Strand 3	A	271	275	parallel
Strand 4	A	323	328	parallel
Strand 5	A	357	363	parallel
Strand 6	A	390	392	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	454	first strand
Strand 2	A	463	471	anti-parallel
Strand 3	A	417	425	anti-parallel
Strand 4	A	486	489	parallel
Strand 5	A	509	513	parallel
Strand 6	A	540	544	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	680	684	first strand
Strand 2	A	762	766	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	704	710	first strand
Strand 2	A	734	740	anti-parallel
Strand 3	A	724	725	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1113	1115	first strand
Strand 2	A	1099	1101	anti-parallel
Strand 3	A	1036	1040	anti-parallel
Strand 4	A	1063	1068	parallel
Strand 5	A	985	990	parallel
Strand 6	A	956	962	parallel
Strand 7	A	832	836	parallel
Strand 8	A	863	865	parallel
Strand 9	B	215	216	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	181	185	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	24	27	parallel
Strand 3	B	81	85	parallel
Strand 4	B	108	113	parallel
Strand 5	B	167	172	parallel
Strand 6	B	139	143	parallel
Strand 7	B	304	306	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	265	first strand
Strand 2	B	297	302	anti-parallel
Strand 3	B	271	275	parallel
Strand 4	B	323	328	parallel
Strand 5	B	357	363	parallel
Strand 6	B	390	392	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	454	first strand
Strand 2	B	463	471	anti-parallel
Strand 3	B	417	425	anti-parallel
Strand 4	B	486	489	parallel
Strand 5	B	509	513	parallel
Strand 6	B	540	544	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	684	first strand
Strand 2	B	762	766	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	704	710	first strand
Strand 2	B	734	740	anti-parallel
Strand 3	B	724	725	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PLM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PLM