Analysis of interatomic Contacts of Structural Units in PDB entry:
7PLQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PLQ entry

There are 2 chains in PDB entry 7PLQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 250SER 431
B
 GLY 247ALA 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 7PLQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
252 260Right-handed alpha
Helix 2
AA2
A
267 269Right-handed 310
Helix 3
AA3
A
286 303Right-handed alpha
Helix 4
AA4
A
315 326Right-handed alpha
Helix 5
AA5
A
350 357Right-handed alpha
Helix 6
AA6
A
411 413Right-handed 310
Helix 7
AA7
A
414 418Right-handed alpha
Helix 8
AA8
B
252 260Right-handed alpha
Helix 9
AA9
B
267 269Right-handed 310
Helix 10
AB1
B
286 303Right-handed alpha
Helix 11
AB2
B
315 326Right-handed alpha
Helix 12
AB3
B
350 357Right-handed alpha
Helix 13
AB4
B
411 418Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7PLQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 276first strand
Strand 2
A
419 428anti-parallel
Strand 3
A
365 374anti-parallel
Strand 4
A
307 314anti-parallel
Strand 5
A
343 347anti-parallel
Strand 6
A
408 410anti-parallel
Strand 7
A
397 399anti-parallel
Strand 8
A
378 380parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 276first strand
Strand 2
B
419 428anti-parallel
Strand 3
B
365 374anti-parallel
Strand 4
B
307 314anti-parallel
Strand 5
B
343 347anti-parallel
Strand 6
B
408 410anti-parallel
Strand 7
B
397 399anti-parallel
Strand 8
B
378 380parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il