Analysis of interatomic Contacts of Structural Units in PDB entry:
7PM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PM2 entry

There are 4 chains in PDB entry 7PM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PHE 4SER 150
A
 GLU 5ARG 792
C
 THR 5GLU 72
C
 GLY 74PHE 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 7PM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
5 20Right-handed alpha
Helix 2
AA2
B
29 39Right-handed alpha
Helix 3
AA3
B
44 53Right-handed alpha
Helix 4
AA4
B
56 63Right-handed alpha
Helix 5
AA5
B
67 79Right-handed alpha
Helix 6
AA6
B
87 95Right-handed alpha
Helix 7
AA7
B
105 116Right-handed alpha
Helix 8
AA8
B
121 130Right-handed alpha
Helix 9
AA9
B
140 150Right-handed alpha
Helix 10
AB1
A
73 77Right-handed 310
Helix 11
AB2
A
81 94Right-handed alpha
Helix 12
AB3
A
116 120Right-handed 310
Helix 13
AB4
A
121 129Right-handed alpha
Helix 14
AB5
A
131 135Right-handed 310
Helix 15
AB6
A
138 153Right-handed alpha
Helix 16
AB7
A
168 184Right-handed alpha
Helix 17
AB8
A
192 207Right-handed alpha
Helix 18
AB9
A
246 250Right-handed 310
Helix 19
AC1
A
259 268Right-handed alpha
Helix 20
AC2
A
269 278Right-handed 310
Helix 21
AC3
A
281 284Right-handed 310
Helix 22
AC4
A
285 290Right-handed alpha
Helix 23
AC5
A
300 315Right-handed alpha
Helix 24
AC6
A
318 338Right-handed alpha
Helix 25
AC7
A
354 365Right-handed alpha
Helix 26
AC8
A
367 376Right-handed alpha
Helix 27
AC9
A
392 424Right-handed alpha
Helix 28
AD1
A
448 480Right-handed alpha
Helix 29
AD2
A
492 500Right-handed alpha
Helix 30
AD3
A
504 515Right-handed alpha
Helix 31
AD4
A
519 532Right-handed alpha
Helix 32
AD5
A
573 582Right-handed alpha
Helix 33
AD6
A
587 593Right-handed alpha
Helix 34
AD7
A
630 634Right-handed 310
Helix 35
AD8
A
635 652Right-handed alpha
Helix 36
AD9
A
674 685Right-handed alpha
Helix 37
AE1
A
686 695Right-handed alpha
Helix 38
AE2
A
704 712Right-handed alpha
Helix 39
AE3
A
713 715Right-handed 310
Helix 40
AE4
A
723 736Right-handed alpha
Helix 41
AE5
A
754 792Right-handed alpha
Helix 42
AE6
C
55 62Right-handed alpha
Helix 43
AE7
C
78 92Right-handed alpha
Helix 44
AE8
C
97 101Right-handed 310
Helix 45
AE9
C
112 128Right-handed alpha
Helix 46
AF1
C
137 146Right-handed alpha
Helix 47
AF2
C
172 175Right-handed 310
Helix 48
AF3
C
181 194Right-handed alpha
Helix 49
AF4
C
195 197Right-handed 310
Helix 50
AF5
C
202 217Right-handed alpha
Helix 51
AF6
C
222 233Right-handed alpha
Helix 52
AF7
C
252 257Right-handed alpha
Helix 53
AF8
C
258 263Right-handed alpha
Helix 54
AF9
C
273 285Right-handed alpha
Helix 55
AG1
C
286 295Right-handed alpha
Helix 56
AG2
C
301 306Right-handed 310
Helix 57
AG3
C
308 321Right-handed alpha
Helix 58
AG4
C
334 347Right-handed alpha
Helix 59
AG5
C
348 349Right-handed 310
Helix 60
AG6
C
350 355Right-handed 310
Helix 61
AG7
C
359 366Right-handed alpha
Helix 62
AG8
C
368 375Right-handed alpha
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There are 14 sheets in PDB entry 7PM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
64 66anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
22 27anti-parallel
Strand 3
A
37 41anti-parallel
Strand 4
A
47 51anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
655 662parallel
Strand 4
A
157 163parallel
Strand 5
A
431 439parallel
Strand 6
A
221 228anti-parallel
Strand 7
A
234 242anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
217 218anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 344first strand
Strand 2
A
347 349anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 381first strand
Strand 2
A
386 390anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
A
547 551anti-parallel
Strand 3
A
556 560anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
700 703first strand
Strand 2
A
748 751anti-parallel
Strand 3
A
742 744anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 32first strand
Strand 2
C
16 21anti-parallel
Strand 3
C
8 12anti-parallel
Strand 4
C
103 107parallel
Strand 5
C
131 136parallel
Strand 6
C
357 358anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 54first strand
Strand 2
C
35 38anti-parallel
Strand 3
C
65 68anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 72first strand
Strand 2
C
75 76anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
160 166anti-parallel
Strand 3
C
176 178anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
160 166anti-parallel
Strand 3
C
150 155anti-parallel
Strand 4
C
297 300parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 241first strand
Strand 2
C
247 250anti-parallel
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