Analysis of interatomic Contacts of Structural Units in PDB entry:
7PM3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PM3 entry

There are 6 chains in PDB entry 7PM3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 5	GLU 72
B	GLY 74	PHE 375
C	THR 5	GLU 72
C	GLY 74	PHE 375
D	THR 5	GLU 72
D	GLY 74	PHE 375

There are 54 helices in PDB entry 7PM3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	55	61	Right-handed alpha
Helix 2	AA2	B	78	91	Right-handed alpha
Helix 3	AA3	B	112	126	Right-handed alpha
Helix 4	AA4	B	137	146	Right-handed alpha
Helix 5	AA5	B	181	195	Right-handed alpha
Helix 6	AA6	B	202	217	Right-handed alpha
Helix 7	AA7	B	222	233	Right-handed alpha
Helix 8	AA8	B	234	237	Right-handed 310
Helix 9	AA9	B	252	263	Right-handed alpha
Helix 10	AB1	B	273	284	Right-handed alpha
Helix 11	AB2	B	286	295	Right-handed alpha
Helix 12	AB3	B	301	306	Right-handed 310
Helix 13	AB4	B	308	321	Right-handed alpha
Helix 14	AB5	B	334	336	Right-handed 310
Helix 15	AB6	B	337	349	Right-handed alpha
Helix 16	AB7	B	350	355	Right-handed 310
Helix 17	AB8	B	359	366	Right-handed alpha
Helix 18	AB9	B	367	372	Right-handed 310
Helix 19	AC1	C	55	61	Right-handed alpha
Helix 20	AC2	C	78	91	Right-handed alpha
Helix 21	AC3	C	112	126	Right-handed alpha
Helix 22	AC4	C	137	146	Right-handed alpha
Helix 23	AC5	C	181	195	Right-handed alpha
Helix 24	AC6	C	202	217	Right-handed alpha
Helix 25	AC7	C	222	233	Right-handed alpha
Helix 26	AC8	C	234	237	Right-handed 310
Helix 27	AC9	C	252	263	Right-handed alpha
Helix 28	AD1	C	273	284	Right-handed alpha
Helix 29	AD2	C	286	295	Right-handed alpha
Helix 30	AD3	C	301	306	Right-handed 310
Helix 31	AD4	C	308	321	Right-handed alpha
Helix 32	AD5	C	334	336	Right-handed 310
Helix 33	AD6	C	337	349	Right-handed alpha
Helix 34	AD7	C	350	355	Right-handed 310
Helix 35	AD8	C	359	366	Right-handed alpha
Helix 36	AD9	C	367	372	Right-handed 310
Helix 37	AE1	D	55	61	Right-handed alpha
Helix 38	AE2	D	78	91	Right-handed alpha
Helix 39	AE3	D	112	126	Right-handed alpha
Helix 40	AE4	D	137	146	Right-handed alpha
Helix 41	AE5	D	181	195	Right-handed alpha
Helix 42	AE6	D	202	217	Right-handed alpha
Helix 43	AE7	D	222	233	Right-handed alpha
Helix 44	AE8	D	234	237	Right-handed 310
Helix 45	AE9	D	252	263	Right-handed alpha
Helix 46	AF1	D	273	284	Right-handed alpha
Helix 47	AF2	D	286	295	Right-handed alpha
Helix 48	AF3	D	301	306	Right-handed 310
Helix 49	AF4	D	308	321	Right-handed alpha
Helix 50	AF5	D	334	336	Right-handed 310
Helix 51	AF6	D	337	349	Right-handed alpha
Helix 52	AF7	D	350	355	Right-handed 310
Helix 53	AF8	D	359	366	Right-handed alpha
Helix 54	AF9	D	367	372	Right-handed 310

There are 18 sheets in PDB entry 7PM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	17	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	17	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	17	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PM3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PM3