Analysis of interatomic Contacts of Structural Units in PDB entry:
7PM4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PM4 entry

There are 4 chains in PDB entry 7PM4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 31	LYS 461
B	ARG 31	LYS 461
C	ARG 31	LYS 461
D	ARG 31	LYS 461

There are 68 helices in PDB entry 7PM4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	40	Right-handed alpha
Helix 2	AA2	A	45	52	Right-handed alpha
Helix 3	AA3	A	60	64	Right-handed 310
Helix 4	AA4	A	71	77	Right-handed alpha
Helix 5	AA5	A	81	92	Right-handed alpha
Helix 6	AA6	A	97	99	Right-handed 310
Helix 7	AA7	A	100	105	Right-handed alpha
Helix 8	AA8	A	111	122	Right-handed alpha
Helix 9	AA9	A	158	169	Right-handed alpha
Helix 10	AB1	A	185	194	Right-handed alpha
Helix 11	AB2	A	199	205	Right-handed alpha
Helix 12	AB3	A	205	216	Right-handed alpha
Helix 13	AB4	A	231	236	Right-handed alpha
Helix 14	AB5	A	236	247	Right-handed alpha
Helix 15	AB6	A	312	326	Right-handed alpha
Helix 16	AB7	A	343	361	Right-handed alpha
Helix 17	AB8	A	362	364	Right-handed 310
Helix 18	AB9	B	35	40	Right-handed alpha
Helix 19	AC1	B	45	52	Right-handed alpha
Helix 20	AC2	B	60	64	Right-handed 310
Helix 21	AC3	B	71	77	Right-handed alpha
Helix 22	AC4	B	81	92	Right-handed alpha
Helix 23	AC5	B	97	99	Right-handed 310
Helix 24	AC6	B	100	105	Right-handed alpha
Helix 25	AC7	B	111	122	Right-handed alpha
Helix 26	AC8	B	158	169	Right-handed alpha
Helix 27	AC9	B	185	194	Right-handed alpha
Helix 28	AD1	B	199	205	Right-handed alpha
Helix 29	AD2	B	205	216	Right-handed alpha
Helix 30	AD3	B	231	236	Right-handed alpha
Helix 31	AD4	B	236	247	Right-handed alpha
Helix 32	AD5	B	312	326	Right-handed alpha
Helix 33	AD6	B	343	361	Right-handed alpha
Helix 34	AD7	B	362	364	Right-handed 310
Helix 35	AD8	C	35	40	Right-handed alpha
Helix 36	AD9	C	45	52	Right-handed alpha
Helix 37	AE1	C	60	64	Right-handed 310
Helix 38	AE2	C	71	77	Right-handed alpha
Helix 39	AE3	C	81	92	Right-handed alpha
Helix 40	AE4	C	97	99	Right-handed 310
Helix 41	AE5	C	100	105	Right-handed alpha
Helix 42	AE6	C	111	122	Right-handed alpha
Helix 43	AE7	C	158	169	Right-handed alpha
Helix 44	AE8	C	185	194	Right-handed alpha
Helix 45	AE9	C	199	205	Right-handed alpha
Helix 46	AF1	C	205	216	Right-handed alpha
Helix 47	AF2	C	231	236	Right-handed alpha
Helix 48	AF3	C	236	247	Right-handed alpha
Helix 49	AF4	C	312	326	Right-handed alpha
Helix 50	AF5	C	343	361	Right-handed alpha
Helix 51	AF6	C	362	364	Right-handed 310
Helix 52	AF7	D	35	40	Right-handed alpha
Helix 53	AF8	D	45	52	Right-handed alpha
Helix 54	AF9	D	60	64	Right-handed 310
Helix 55	AG1	D	71	77	Right-handed alpha
Helix 56	AG2	D	81	92	Right-handed alpha
Helix 57	AG3	D	97	99	Right-handed 310
Helix 58	AG4	D	100	105	Right-handed alpha
Helix 59	AG5	D	111	122	Right-handed alpha
Helix 60	AG6	D	158	169	Right-handed alpha
Helix 61	AG7	D	185	194	Right-handed alpha
Helix 62	AG8	D	199	205	Right-handed alpha
Helix 63	AG9	D	205	216	Right-handed alpha
Helix 64	AH1	D	231	236	Right-handed alpha
Helix 65	AH2	D	236	247	Right-handed alpha
Helix 66	AH3	D	312	326	Right-handed alpha
Helix 67	AH4	D	343	361	Right-handed alpha
Helix 68	AH5	D	362	364	Right-handed 310

There are 12 sheets in PDB entry 7PM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	221	225	parallel
Strand 3	A	173	179	parallel
Strand 4	A	126	132	parallel
Strand 5	A	53	57	parallel
Strand 6	A	329	334	parallel
Strand 7	A	289	293	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	374	first strand
Strand 2	A	381	386	anti-parallel
Strand 3	A	389	394	anti-parallel
Strand 4	A	453	461	anti-parallel
Strand 5	A	409	416	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	405	first strand
Strand 2	A	435	438	anti-parallel
Strand 3	A	426	429	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	256	first strand
Strand 2	B	221	225	parallel
Strand 3	B	173	179	parallel
Strand 4	B	126	132	parallel
Strand 5	B	53	57	parallel
Strand 6	B	329	334	parallel
Strand 7	B	289	293	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	374	first strand
Strand 2	B	381	386	anti-parallel
Strand 3	B	389	394	anti-parallel
Strand 4	B	453	461	anti-parallel
Strand 5	B	409	416	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	405	first strand
Strand 2	B	435	438	anti-parallel
Strand 3	B	426	429	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	256	first strand
Strand 2	C	221	225	parallel
Strand 3	C	173	179	parallel
Strand 4	C	126	132	parallel
Strand 5	C	53	57	parallel
Strand 6	C	329	334	parallel
Strand 7	C	289	293	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	374	first strand
Strand 2	C	381	386	anti-parallel
Strand 3	C	389	394	anti-parallel
Strand 4	C	453	461	anti-parallel
Strand 5	C	409	416	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	402	405	first strand
Strand 2	C	435	438	anti-parallel
Strand 3	C	426	429	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	256	first strand
Strand 2	D	221	225	parallel
Strand 3	D	173	179	parallel
Strand 4	D	126	132	parallel
Strand 5	D	53	57	parallel
Strand 6	D	329	334	parallel
Strand 7	D	289	293	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	374	first strand
Strand 2	D	381	386	anti-parallel
Strand 3	D	389	394	anti-parallel
Strand 4	D	453	461	anti-parallel
Strand 5	D	409	416	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	405	first strand
Strand 2	D	435	438	anti-parallel
Strand 3	D	426	429	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PM4

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PM4