Analysis of interatomic Contacts of Structural Units in PDB entry:
7PMC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PMC entry

There are 8 chains in PDB entry 7PMC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	TRP 1	TRP 1
H	ALA 3	ALA 3
H	CYS 5	CYS 5
H	ALA 7	ALA 7
B	PHE 4	SER 150
A	GLU 5	ARG 792
C	THR 5	GLU 72
C	GLY 74	PHE 375

There are 61 helices in PDB entry 7PMC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	5	19	Right-handed alpha
Helix 2	AA2	B	29	39	Right-handed alpha
Helix 3	AA3	B	44	53	Right-handed alpha
Helix 4	AA4	B	56	63	Right-handed alpha
Helix 5	AA5	B	66	79	Right-handed alpha
Helix 6	AA6	B	87	96	Right-handed alpha
Helix 7	AA7	B	106	116	Right-handed alpha
Helix 8	AA8	B	121	130	Right-handed alpha
Helix 9	AA9	B	141	150	Right-handed alpha
Helix 10	AB1	A	73	77	Right-handed 310
Helix 11	AB2	A	81	95	Right-handed alpha
Helix 12	AB3	A	120	128	Right-handed alpha
Helix 13	AB4	A	138	153	Right-handed alpha
Helix 14	AB5	A	168	184	Right-handed alpha
Helix 15	AB6	A	191	207	Right-handed alpha
Helix 16	AB7	A	245	250	Right-handed 310
Helix 17	AB8	A	259	267	Right-handed alpha
Helix 18	AB9	A	273	278	Right-handed 310
Helix 19	AC1	A	281	284	Right-handed 310
Helix 20	AC2	A	285	290	Right-handed alpha
Helix 21	AC3	A	303	315	Right-handed alpha
Helix 22	AC4	A	318	337	Right-handed alpha
Helix 23	AC5	A	354	365	Right-handed alpha
Helix 24	AC6	A	367	376	Right-handed alpha
Helix 25	AC7	A	392	424	Right-handed alpha
Helix 26	AC8	A	448	479	Right-handed alpha
Helix 27	AC9	A	483	487	Right-handed 310
Helix 28	AD1	A	492	501	Right-handed alpha
Helix 29	AD2	A	506	515	Right-handed alpha
Helix 30	AD3	A	519	532	Right-handed alpha
Helix 31	AD4	A	563	569	Right-handed alpha
Helix 32	AD5	A	573	582	Right-handed alpha
Helix 33	AD6	A	587	593	Right-handed alpha
Helix 34	AD7	A	594	595	Right-handed 310
Helix 35	AD8	A	629	633	Right-handed 310
Helix 36	AD9	A	635	653	Right-handed alpha
Helix 37	AE1	A	674	685	Right-handed alpha
Helix 38	AE2	A	686	696	Right-handed alpha
Helix 39	AE3	A	704	711	Right-handed alpha
Helix 40	AE4	A	712	715	Right-handed 310
Helix 41	AE5	A	716	720	Right-handed 310
Helix 42	AE6	A	723	736	Right-handed alpha
Helix 43	AE7	A	754	792	Right-handed alpha
Helix 44	AE8	C	55	62	Right-handed alpha
Helix 45	AE9	C	78	93	Right-handed alpha
Helix 46	AF1	C	97	101	Right-handed 310
Helix 47	AF2	C	112	128	Right-handed alpha
Helix 48	AF3	C	137	146	Right-handed alpha
Helix 49	AF4	C	172	175	Right-handed 310
Helix 50	AF5	C	181	196	Right-handed alpha
Helix 51	AF6	C	202	217	Right-handed alpha
Helix 52	AF7	C	222	233	Right-handed alpha
Helix 53	AF8	C	257	262	Right-handed 310
Helix 54	AF9	C	273	285	Right-handed alpha
Helix 55	AG1	C	286	296	Right-handed alpha
Helix 56	AG2	C	302	306	Right-handed 310
Helix 57	AG3	C	308	321	Right-handed alpha
Helix 58	AG4	C	334	349	Right-handed alpha
Helix 59	AG5	C	350	355	Right-handed 310
Helix 60	AG6	C	359	366	Right-handed alpha
Helix 61	AG7	C	368	375	Right-handed alpha

There are 16 sheets in PDB entry 7PMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	64	65	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	138	140	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	15	first strand
Strand 2	A	23	27	anti-parallel
Strand 3	A	37	41	anti-parallel
Strand 4	A	48	51	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	106	108	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	242	first strand
Strand 2	A	221	228	anti-parallel
Strand 3	A	431	437	anti-parallel
Strand 4	A	157	163	parallel
Strand 5	A	658	661	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	217	218	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	348	349	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	381	first strand
Strand 2	A	386	390	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	539	first strand
Strand 2	A	547	551	anti-parallel
Strand 3	A	556	560	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	703	first strand
Strand 2	A	748	751	anti-parallel
Strand 3	A	742	744	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	149	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PMC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PMC