Analysis of interatomic Contacts of Structural Units in PDB entry:
7PMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PMD entry

There are 8 chains in PDB entry 7PMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5ARG 792
C
 GLU 4GLU 72
C
 GLY 74PHE 375
H
 TRP 1TRP 1
H
 ALA 3ALA 3
H
 CYS 5CYS 5
H
 ALA 7ALA 7
B
 PHE 4SER 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 7PMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 77Right-handed 310
Helix 2
AA2
A
81 95Right-handed alpha
Helix 3
AA3
A
116 119Right-handed 310
Helix 4
AA4
A
120 128Right-handed alpha
Helix 5
AA5
A
138 153Right-handed alpha
Helix 6
AA6
A
168 185Right-handed alpha
Helix 7
AA7
A
191 207Right-handed alpha
Helix 8
AA8
A
245 250Right-handed 310
Helix 9
AA9
A
259 269Right-handed alpha
Helix 10
AB1
A
270 271Right-handed 310
Helix 11
AB2
A
272 278Right-handed 310
Helix 12
AB3
A
285 290Right-handed alpha
Helix 13
AB4
A
300 315Right-handed alpha
Helix 14
AB5
A
318 337Right-handed alpha
Helix 15
AB6
A
354 365Right-handed alpha
Helix 16
AB7
A
367 375Right-handed alpha
Helix 17
AB8
A
392 424Right-handed alpha
Helix 18
AB9
A
448 480Right-handed alpha
Helix 19
AC1
A
483 487Right-handed 310
Helix 20
AC2
A
492 501Right-handed alpha
Helix 21
AC3
A
504 515Right-handed alpha
Helix 22
AC4
A
519 532Right-handed alpha
Helix 23
AC5
A
563 569Right-handed alpha
Helix 24
AC6
A
573 582Right-handed alpha
Helix 25
AC7
A
587 594Right-handed alpha
Helix 26
AC8
A
630 634Right-handed 310
Helix 27
AC9
A
635 653Right-handed alpha
Helix 28
AD1
A
674 685Right-handed alpha
Helix 29
AD2
A
686 696Right-handed alpha
Helix 30
AD3
A
704 712Right-handed alpha
Helix 31
AD4
A
713 715Right-handed 310
Helix 32
AD5
A
723 736Right-handed alpha
Helix 33
AD6
A
738 740Right-handed 310
Helix 34
AD7
A
754 792Right-handed alpha
Helix 35
AD8
C
55 61Right-handed alpha
Helix 36
AD9
C
78 92Right-handed alpha
Helix 37
AE1
C
97 101Right-handed 310
Helix 38
AE2
C
112 126Right-handed alpha
Helix 39
AE3
C
137 146Right-handed alpha
Helix 40
AE4
C
172 175Right-handed 310
Helix 41
AE5
C
183 196Right-handed alpha
Helix 42
AE6
C
202 217Right-handed alpha
Helix 43
AE7
C
222 232Right-handed alpha
Helix 44
AE8
C
252 257Right-handed alpha
Helix 45
AE9
C
258 262Right-handed 310
Helix 46
AF1
C
273 283Right-handed alpha
Helix 47
AF2
C
289 295Right-handed alpha
Helix 48
AF3
C
301 306Right-handed 310
Helix 49
AF4
C
308 321Right-handed alpha
Helix 50
AF5
C
334 336Right-handed 310
Helix 51
AF6
C
337 347Right-handed alpha
Helix 52
AF7
C
348 349Right-handed 310
Helix 53
AF8
C
350 355Right-handed 310
Helix 54
AF9
C
359 366Right-handed alpha
Helix 55
AG1
C
368 374Right-handed alpha
Helix 56
AG2
B
5 19Right-handed alpha
Helix 57
AG3
B
29 39Right-handed alpha
Helix 58
AG4
B
44 53Right-handed alpha
Helix 59
AG5
B
56 63Right-handed alpha
Helix 60
AG6
B
67 79Right-handed alpha
Helix 61
AG7
B
87 95Right-handed alpha
Helix 62
AG8
B
105 116Right-handed alpha
Helix 63
AG9
B
121 130Right-handed alpha
Helix 64
AH1
B
140 150Right-handed alpha
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There are 14 sheets in PDB entry 7PMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
22 27anti-parallel
Strand 3
A
37 41anti-parallel
Strand 4
A
47 51anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
658 662parallel
Strand 4
A
157 162parallel
Strand 5
A
431 438parallel
Strand 6
A
221 228anti-parallel
Strand 7
A
234 242anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
214 218anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 344first strand
Strand 2
A
347 349anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 382first strand
Strand 2
A
385 390anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
A
547 551anti-parallel
Strand 3
A
556 560anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
700 703first strand
Strand 2
A
748 751anti-parallel
Strand 3
A
742 744anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 32first strand
Strand 2
C
16 21anti-parallel
Strand 3
C
8 11anti-parallel
Strand 4
C
103 107parallel
Strand 5
C
131 136parallel
Strand 6
C
357 358anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 54first strand
Strand 2
C
35 38anti-parallel
Strand 3
C
65 68anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 72first strand
Strand 2
C
75 76anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
160 166anti-parallel
Strand 3
C
176 178anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
160 166anti-parallel
Strand 3
C
150 155anti-parallel
Strand 4
C
297 300parallel
Strand 5
C
329 330parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 241first strand
Strand 2
C
247 250anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
64 66anti-parallel
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