Analysis of interatomic Contacts of Structural Units in PDB entry:
7PMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PMF entry

There are 8 chains in PDB entry 7PMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PHE 4SER 150
A
 GLU 5ARG 792
C
 GLU 4GLU 72
C
 GLY 74PHE 375
H
 TRP 1TRP 1
H
 ALA 3ALA 3
H
 CYS 5CYS 5
H
 ALA 7ALA 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 7PMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
5 19Right-handed alpha
Helix 2
AA2
B
29 39Right-handed alpha
Helix 3
AA3
B
44 53Right-handed alpha
Helix 4
AA4
B
56 63Right-handed alpha
Helix 5
AA5
B
67 79Right-handed alpha
Helix 6
AA6
B
87 95Right-handed alpha
Helix 7
AA7
B
105 116Right-handed alpha
Helix 8
AA8
B
121 130Right-handed alpha
Helix 9
AA9
B
140 150Right-handed alpha
Helix 10
AB1
A
81 95Right-handed alpha
Helix 11
AB2
A
116 119Right-handed 310
Helix 12
AB3
A
120 128Right-handed alpha
Helix 13
AB4
A
138 153Right-handed alpha
Helix 14
AB5
A
168 185Right-handed alpha
Helix 15
AB6
A
191 198Right-handed alpha
Helix 16
AB7
A
199 207Right-handed alpha
Helix 17
AB8
A
245 250Right-handed 310
Helix 18
AB9
A
259 268Right-handed alpha
Helix 19
AC1
A
269 271Right-handed 310
Helix 20
AC2
A
272 278Right-handed 310
Helix 21
AC3
A
281 284Right-handed 310
Helix 22
AC4
A
285 290Right-handed alpha
Helix 23
AC5
A
300 314Right-handed alpha
Helix 24
AC6
A
318 338Right-handed alpha
Helix 25
AC7
A
354 365Right-handed alpha
Helix 26
AC8
A
367 375Right-handed alpha
Helix 27
AC9
A
392 424Right-handed alpha
Helix 28
AD1
A
448 480Right-handed alpha
Helix 29
AD2
A
483 487Right-handed 310
Helix 30
AD3
A
492 501Right-handed alpha
Helix 31
AD4
A
504 515Right-handed alpha
Helix 32
AD5
A
519 532Right-handed alpha
Helix 33
AD6
A
563 568Right-handed alpha
Helix 34
AD7
A
573 582Right-handed alpha
Helix 35
AD8
A
587 594Right-handed alpha
Helix 36
AD9
A
630 634Right-handed 310
Helix 37
AE1
A
635 653Right-handed alpha
Helix 38
AE2
A
674 685Right-handed alpha
Helix 39
AE3
A
686 696Right-handed alpha
Helix 40
AE4
A
704 712Right-handed alpha
Helix 41
AE5
A
713 715Right-handed 310
Helix 42
AE6
A
725 736Right-handed alpha
Helix 43
AE7
A
738 740Right-handed 310
Helix 44
AE8
A
754 792Right-handed alpha
Helix 45
AE9
C
55 61Right-handed alpha
Helix 46
AF1
C
78 92Right-handed alpha
Helix 47
AF2
C
97 101Right-handed 310
Helix 48
AF3
C
112 126Right-handed alpha
Helix 49
AF4
C
137 146Right-handed alpha
Helix 50
AF5
C
172 175Right-handed 310
Helix 51
AF6
C
182 195Right-handed alpha
Helix 52
AF7
C
202 217Right-handed alpha
Helix 53
AF8
C
222 233Right-handed alpha
Helix 54
AF9
C
252 260Right-handed alpha
Helix 55
AG1
C
273 283Right-handed alpha
Helix 56
AG2
C
289 295Right-handed alpha
Helix 57
AG3
C
301 306Right-handed 310
Helix 58
AG4
C
308 321Right-handed alpha
Helix 59
AG5
C
334 336Right-handed 310
Helix 60
AG6
C
337 349Right-handed alpha
Helix 61
AG7
C
350 355Right-handed 310
Helix 62
AG8
C
359 366Right-handed alpha
Helix 63
AG9
C
368 374Right-handed alpha
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There are 14 sheets in PDB entry 7PMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
64 66anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
22 27anti-parallel
Strand 3
A
37 42anti-parallel
Strand 4
A
47 51anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
658 662parallel
Strand 4
A
157 163parallel
Strand 5
A
431 439parallel
Strand 6
A
221 228anti-parallel
Strand 7
A
234 242anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
217 218anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
348 349anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 381first strand
Strand 2
A
386 390anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
A
547 551anti-parallel
Strand 3
A
556 560anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
700 703first strand
Strand 2
A
748 751anti-parallel
Strand 3
A
742 744anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 32first strand
Strand 2
C
16 21anti-parallel
Strand 3
C
8 11anti-parallel
Strand 4
C
103 107parallel
Strand 5
C
131 136parallel
Strand 6
C
357 358anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 54first strand
Strand 2
C
35 38anti-parallel
Strand 3
C
65 68anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 72first strand
Strand 2
C
75 76anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
160 166anti-parallel
Strand 3
C
176 178anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
160 166anti-parallel
Strand 3
C
150 155anti-parallel
Strand 4
C
297 300parallel
Strand 5
C
329 330parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 241first strand
Strand 2
C
247 250anti-parallel
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