Analysis of interatomic Contacts of Structural Units in PDB entry:
7PMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PMM entry

There are 4 chains in PDB entry 7PMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 457
B
 GLY 0LEU 456
C
 G 1 U 44
D
 G 1 U 44
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 7PMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 8Right-handed 310
Helix 2
AA2
A
11 22Right-handed alpha
Helix 3
AA3
A
27 39Right-handed alpha
Helix 4
AA4
A
52 64Right-handed alpha
Helix 5
AA5
A
80 95Right-handed alpha
Helix 6
AA6
A
111 119Right-handed alpha
Helix 7
AA7
A
129 139Right-handed alpha
Helix 8
AA8
A
154 159Right-handed alpha
Helix 9
AA9
A
163 174Right-handed alpha
Helix 10
AB1
A
188 195Right-handed alpha
Helix 11
AB2
A
196 199Right-handed 310
Helix 12
AB3
A
227 240Right-handed alpha
Helix 13
AB4
A
250 264Right-handed alpha
Helix 14
AB5
A
276 290Right-handed alpha
Helix 15
AB6
A
299 302Right-handed 310
Helix 16
AB7
A
321 330Right-handed alpha
Helix 17
AB8
A
346 348Right-handed 310
Helix 18
AB9
A
349 361Right-handed alpha
Helix 19
AC1
A
390 394Right-handed 310
Helix 20
AC2
A
396 406Right-handed alpha
Helix 21
AC3
A
411 413Right-handed 310
Helix 22
AC4
A
433 444Right-handed alpha
Helix 23
AC5
B
3 8Right-handed 310
Helix 24
AC6
B
11 21Right-handed alpha
Helix 25
AC7
B
27 39Right-handed alpha
Helix 26
AC8
B
52 63Right-handed alpha
Helix 27
AC9
B
80 95Right-handed alpha
Helix 28
AD1
B
96 98Right-handed 310
Helix 29
AD2
B
111 119Right-handed alpha
Helix 30
AD3
B
129 139Right-handed alpha
Helix 31
AD4
B
154 159Right-handed alpha
Helix 32
AD5
B
160 172Right-handed alpha
Helix 33
AD6
B
188 195Right-handed alpha
Helix 34
AD7
B
196 198Right-handed 310
Helix 35
AD8
B
227 240Right-handed alpha
Helix 36
AD9
B
250 264Right-handed alpha
Helix 37
AE1
B
276 289Right-handed alpha
Helix 38
AE2
B
299 302Right-handed 310
Helix 39
AE3
B
321 330Right-handed alpha
Helix 40
AE4
B
346 348Right-handed 310
Helix 41
AE5
B
349 361Right-handed alpha
Helix 42
AE6
B
390 394Right-handed 310
Helix 43
AE7
B
396 401Right-handed alpha
Helix 44
AE8
B
438 442Right-handed alpha
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There are 6 sheets in PDB entry 7PMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
125 128parallel
Strand 3
A
74 77parallel
Strand 4
A
149 153parallel
Strand 5
A
179 184parallel
Strand 6
A
43 46parallel
Strand 7
A
203 206parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 222first strand
Strand 2
A
339 345parallel
Strand 3
A
312 315parallel
Strand 4
A
244 247parallel
Strand 5
A
294 297parallel
Strand 6
A
268 271parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 420first strand
Strand 2
A
424 430anti-parallel
Strand 3
A
382 388anti-parallel
Strand 4
A
453 455anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 106first strand
Strand 2
B
125 128parallel
Strand 3
B
74 77parallel
Strand 4
B
149 153parallel
Strand 5
B
179 184parallel
Strand 6
B
43 46parallel
Strand 7
B
203 206parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 222first strand
Strand 2
B
339 345parallel
Strand 3
B
312 315parallel
Strand 4
B
244 247parallel
Strand 5
B
294 297parallel
Strand 6
B
268 271parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
415 420first strand
Strand 2
B
424 430anti-parallel
Strand 3
B
382 388anti-parallel
Strand 4
B
453 455anti-parallel
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